CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68706	Soybean	endoplasmic reticulum	97.08	97.08
KRG96941	Soybean	nucleus	97.08	97.08
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	89.05	91.73
GSMUA_AchrUn_...	Banana	mitochondrion	82.48	91.13
PGSC0003DMT400049836	Potato	mitochondrion	88.32	90.98
PGSC0003DMT400051640	Potato	extracellular	88.32	90.98
Solyc09g065330.2.1	Tomato	nucleus	88.32	90.98
VIT_14s0030g01620.t01	Wine grape	mitochondrion	90.51	90.51
KRG92744	Soybean	mitochondrion	90.51	89.86
GSMUA_Achr6P05510_001	Banana	mitochondrion	89.78	89.13
AT3G04920.1	Thale cress	mitochondrion	85.4	87.97
GSMUA_Achr9P28760_001	Banana	mitochondrion	88.32	87.68
GSMUA_Achr2P15660_001	Banana	mitochondrion	88.32	87.68
Bra040115.1-P	Field mustard	mitochondrion	84.67	87.22
CDX80683	Canola	mitochondrion	84.67	87.22
CDX86189	Canola	mitochondrion	84.67	87.22
Bra036117.1-P	Field mustard	mitochondrion	84.67	87.22
CDY59816	Canola	mitochondrion	84.67	87.22
Bra009989.1-P	Field mustard	mitochondrion	84.67	87.22
CDY50766	Canola	mitochondrion	84.67	87.22
CDY41909	Canola	mitochondrion	84.67	87.22
CDY30024	Canola	mitochondrion	84.67	87.22
CDY21104	Canola	mitochondrion	84.67	87.22
CDY00010	Canola	extracellular	84.67	87.22
GSMUA_Achr4P30950_001	Banana	mitochondrion	78.83	87.1
CDY05587	Canola	mitochondrion	83.94	86.47
Bra040415.1-P	Field mustard	mitochondrion	83.94	86.47
CDY52499	Canola	mitochondrion	83.94	86.47
KRH04214	Soybean	cytosol	60.58	85.57
KRH04217	Soybean	mitochondrion	47.45	85.53
AT5G28060.1	Thale cress	mitochondrion	82.48	84.96
Os06t0555400-01	Rice	cytosol, mitochondrion	69.34	82.61
CDX74161	Canola	mitochondrion	57.66	81.44
Zm00001d011741_P001	Maize	plastid	80.29	80.29
Zm00001d016276_P002	Maize	cytosol, mitochondrion	80.29	80.29
Zm00001d043606_P001	Maize	mitochondrion	79.56	79.56
EES03542	Sorghum	mitochondrion	79.56	79.56
Os01t0723200-01	Rice	nucleus	79.56	78.99
Os02t0229000-01	Rice	nucleus	79.56	78.99
EES06539	Sorghum	mitochondrion, plastid	78.83	78.83
Zm00001d039246_P001	Maize	mitochondrion	68.61	78.33
EER88512	Sorghum	mitochondrion	78.1	78.1
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	78.1	77.54
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	78.1	77.54
Zm00001d036985_P001	Maize	mitochondrion, plastid	77.37	77.37
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	77.37	76.81
TraesCS6B01G234000.1	Wheat	golgi, unclear	75.91	75.91
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	75.91	75.91
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	75.91	75.91
TraesCS7A01G356300.1	Wheat	golgi, nucleus, unclear	75.18	75.18
HORVU3Hr1G068610.1	Barley	mitochondrion	72.99	72.99
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	76.64	72.92
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	51.82	66.98
KRH64028	Soybean	mitochondrion	64.96	64.49
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	75.18	60.59
HORVU6Hr1G044840.1	Barley	plasma membrane	75.18	57.87
HORVU2Hr1G055560.3	Barley	cytosol, mitochondrion	51.82	50.71
Zm00001d043381_P001	Maize	cytosol	31.39	47.25
GSMUA_Achr8P20160_001	Banana	mitochondrion	58.39	40.4

Protein Annotations

EntrezGene:100499673	MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	EMBL:ACUP02006572	EMBL:BT089111	UniProt:C6SVB8
EnsemblPlantsGene:GLYMA_10G160300	GO:GO:0000462	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022627	GO:GO:0030529	EnsemblPlants:KRH34063	ProteinID:KRH34063	ProteinID:KRH34063.1	ProteinID:KRH34064.1
HAMAP:MF_00545	PFAM:PD006052	PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF9
InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e	InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	UniParc:UPI00018C65EA	SEG:seg

Description

hypothetical protein

Coordinates

chr10:-:39440769..39442935

Molecular Weight (calculated)

15741.4 Da

IEP (calculated)

11.356

GRAVY (calculated)

-0.901

Length

137 amino acids

Sequence
(BLAST)

001: MADKAVTIRT RKFMTNRLLS RKQFVVDVLH PGRANVSKAE LKEKLGRMYD VKDTNTVFVF KFRTHFGGGK STGFGLIYDS VENAKKYEPK YRLIRNGLDT
101: KVEKSRKQMK ERKNRAKKIR GVKKTKASDA AKAGKKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.