Factsheet for PGSC0003DMT400051640

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049836	Potato	mitochondrion	100.0	100.0
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	99.25	99.25
AT3G04920.1	Thale cress	mitochondrion	90.98	90.98
VIT_14s0030g01620.t01	Wine grape	mitochondrion	93.23	90.51
AT5G28060.1	Thale cress	mitochondrion	90.23	90.23
CDY59816	Canola	mitochondrion	90.23	90.23
CDY50766	Canola	mitochondrion	90.23	90.23
CDY41909	Canola	mitochondrion	90.23	90.23
CDY30024	Canola	mitochondrion	90.23	90.23
CDY21104	Canola	mitochondrion	90.23	90.23
CDY00010	Canola	extracellular	90.23	90.23
CDX86189	Canola	mitochondrion	90.23	90.23
CDX80683	Canola	mitochondrion	90.23	90.23
Bra040115.1-P	Field mustard	mitochondrion	90.23	90.23
Bra009989.1-P	Field mustard	mitochondrion	90.23	90.23
Bra036117.1-P	Field mustard	mitochondrion	90.23	90.23
CDY05587	Canola	mitochondrion	89.47	89.47
CDY52499	Canola	mitochondrion	89.47	89.47
Bra040415.1-P	Field mustard	mitochondrion	89.47	89.47
KRG96941	Soybean	nucleus	91.73	89.05
VIT_07s0151g00900.t01	Wine grape	mitochondrion	91.73	89.05
KRH34063	Soybean	mitochondrion	90.98	88.32
GSMUA_AchrUn_...	Banana	mitochondrion	81.95	87.9
KRH68706	Soybean	endoplasmic reticulum	90.23	87.59
GSMUA_Achr6P05510_001	Banana	mitochondrion	88.72	85.51
GSMUA_Achr9P28760_001	Banana	mitochondrion	88.72	85.51
GSMUA_Achr4P30950_001	Banana	mitochondrion	79.7	85.48
GSMUA_Achr2P15660_001	Banana	mitochondrion	87.97	84.78
KRG92744	Soybean	mitochondrion	87.97	84.78
CDX74161	Canola	mitochondrion	61.65	84.54
Os06t0555400-01	Rice	cytosol, mitochondrion	72.18	83.48
Zm00001d011741_P001	Maize	plastid	85.71	83.21
Zm00001d043606_P001	Maize	mitochondrion	84.96	82.48
Zm00001d016276_P002	Maize	cytosol, mitochondrion	84.96	82.48
EES03542	Sorghum	mitochondrion	84.96	82.48
EES06539	Sorghum	mitochondrion, plastid	84.96	82.48
Zm00001d039246_P001	Maize	mitochondrion	73.68	81.67
EER88512	Sorghum	mitochondrion	83.46	81.02
KRH04217	Soybean	mitochondrion	45.86	80.26
Os01t0723200-01	Rice	nucleus	82.71	79.71
Os02t0229000-01	Rice	nucleus	82.71	79.71
Zm00001d036985_P001	Maize	mitochondrion, plastid	81.95	79.56
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	81.95	79.56
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	81.95	79.56
TraesCS7A01G356300.1	Wheat	golgi, nucleus, unclear	81.2	78.83
TraesCS6B01G234000.1	Wheat	golgi, unclear	79.7	77.37
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	78.95	76.09
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	78.95	76.09
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	78.2	75.36
KRH04214	Soybean	cytosol	54.89	75.26
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	80.45	74.31
HORVU3Hr1G068610.1	Barley	mitochondrion	74.44	72.26
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	55.64	69.81
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	81.95	64.12
KRH64028	Soybean	mitochondrion	63.91	61.59
HORVU6Hr1G044840.1	Barley	plasma membrane	78.95	58.99
HORVU2Hr1G055560.3	Barley	cytosol, mitochondrion	56.39	53.57
Zm00001d043381_P001	Maize	cytosol	32.33	47.25
GSMUA_Achr8P20160_001	Banana	mitochondrion	59.4	39.9

Protein Annotations

EntrezGene:102590529	EntrezGene:102595901	MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0030529	UniProt:M1BPE5	HAMAP:MF_00545	PFAM:PD006052	PFAM:PF01282	EnsemblPlantsGene:PGSC0003DMG401020055
PGSC:PGSC0003DMG401020055	EnsemblPlants:PGSC0003DMT400051640	ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF5	InterPro:Ribosomal_L23/L15e_core_dom_sf
InterPro:Ribosomal_S24e	InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	UniParc:UPI000276C523	RefSeq:XP_006349688.1	RefSeq:XP_006349689.1
RefSeq:XP_006352771.1	SEG:seg	:	:	:	:

Description

40S ribosomal protein S24 [Source:PGSC_GENE;Acc:PGSC0003DMG401020055]

Coordinates

chr6:-:59011300..59014327

Molecular Weight (calculated)

15406.1 Da

IEP (calculated)

11.338

GRAVY (calculated)

-0.887

Length

133 amino acids

Sequence
(BLAST)

001: MADKAVTIRT RKFMTNRLLA RKQFIIDVLH PGRANVSKAE LKEKLSRMYE VKDPNAIFVF KFRTHFGGGK STGFGLIYDS VENAKKYEPK YRLIRNGLDT
101: KVEKSRKQMK ERKNRAKKVR GVKKTKAGDA KKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.