CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34063	Soybean	mitochondrion	89.86	90.51
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	85.51	88.72
PGSC0003DMT400049836	Potato	mitochondrion	84.78	87.97
PGSC0003DMT400051640	Potato	extracellular	84.78	87.97
Solyc09g065330.2.1	Tomato	nucleus	84.78	87.97
KRH68706	Soybean	endoplasmic reticulum	86.96	87.59
KRG96941	Soybean	nucleus	86.96	87.59
KRH04217	Soybean	mitochondrion	46.38	84.21
AT3G04920.1	Thale cress	mitochondrion	80.43	83.46
CDY59816	Canola	mitochondrion	80.43	83.46
CDY50766	Canola	mitochondrion	80.43	83.46
CDY41909	Canola	mitochondrion	80.43	83.46
CDY21104	Canola	mitochondrion	80.43	83.46
Bra009989.1-P	Field mustard	mitochondrion	80.43	83.46
Bra036117.1-P	Field mustard	mitochondrion	80.43	83.46
CDY00010	Canola	extracellular	80.43	83.46
Bra040115.1-P	Field mustard	mitochondrion	80.43	83.46
CDX80683	Canola	mitochondrion	80.43	83.46
CDX86189	Canola	mitochondrion	80.43	83.46
CDY30024	Canola	mitochondrion	80.43	83.46
VIT_14s0030g01620.t01	Wine grape	mitochondrion	82.61	83.21
Bra040415.1-P	Field mustard	mitochondrion	79.71	82.71
CDY52499	Canola	mitochondrion	79.71	82.71
CDY05587	Canola	mitochondrion	79.71	82.71
GSMUA_AchrUn_...	Banana	mitochondrion	73.19	81.45
AT5G28060.1	Thale cress	mitochondrion	78.26	81.2
GSMUA_Achr6P05510_001	Banana	mitochondrion	80.43	80.43
CDX74161	Canola	mitochondrion	56.52	80.41
GSMUA_Achr2P15660_001	Banana	mitochondrion	78.99	78.99
GSMUA_Achr9P28760_001	Banana	mitochondrion	78.99	78.99
GSMUA_Achr4P30950_001	Banana	mitochondrion	69.57	77.42
Os06t0555400-01	Rice	cytosol, mitochondrion	64.49	77.39
Zm00001d011741_P001	Maize	plastid	75.36	75.91
Zm00001d016276_P002	Maize	cytosol, mitochondrion	75.36	75.91
Zm00001d043606_P001	Maize	mitochondrion	74.64	75.18
EES03542	Sorghum	mitochondrion	74.64	75.18
Os01t0723200-01	Rice	nucleus	74.64	74.64
Os02t0229000-01	Rice	nucleus	74.64	74.64
EES06539	Sorghum	mitochondrion, plastid	73.91	74.45
KRH04214	Soybean	cytosol	52.17	74.23
Zm00001d039246_P001	Maize	mitochondrion	64.49	74.17
EER88512	Sorghum	mitochondrion	73.19	73.72
Zm00001d036985_P001	Maize	mitochondrion, plastid	72.46	72.99
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	72.46	72.46
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	72.46	72.46
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	71.74	71.74
TraesCS6B01G234000.1	Wheat	golgi, unclear	71.01	71.53
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	71.01	71.53
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	71.01	71.53
TraesCS7A01G356300.1	Wheat	golgi, nucleus, unclear	70.29	70.8
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	71.74	68.75
HORVU3Hr1G068610.1	Barley	mitochondrion	68.12	68.61
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	50.72	66.04
KRH64028	Soybean	mitochondrion	64.49	64.49
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	70.29	57.06
HORVU6Hr1G044840.1	Barley	plasma membrane	70.29	54.49
HORVU2Hr1G055560.3	Barley	cytosol, mitochondrion	50.72	50.0
Zm00001d043381_P001	Maize	cytosol	30.43	46.15
GSMUA_Achr8P20160_001	Banana	mitochondrion	52.9	36.87

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	EMBL:ACUP02012766	EnsemblPlantsGene:GLYMA_20G228100	GO:GO:0000462	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	UniProt:I1NIT7
EnsemblPlants:KRG92744	ProteinID:KRG92744	ProteinID:KRG92744.1	HAMAP:MF_00545	PFAM:PD006052	PFAM:PF01282
ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF9	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e	InterPro:Ribosomal_S24e_CS
SUPFAM:SSF54189	UniParc:UPI00023DC00A	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:46261549..46263019

Molecular Weight (calculated)

16140.0 Da

IEP (calculated)

11.022

GRAVY (calculated)

-0.599

Length

138 amino acids

Sequence
(BLAST)

001: MADKAVTIRT RKFMTNRLLS RKQFIVDVLH PGRANVSKAE LKEKLGRMYD VKDTNTVFVF KFRTHFGGGK STGFGLIYDS VENAKKYEPK YRLIRNGLDT
101: KVEKSRKQMK ERKNRAKKIR GVKKVMQFCI VDYCLQLI

Best Arabidopsis Sequence Match ( AT3G04920.1 )
(BLAST)

001: MAEKAVTIRT RKFMTNRLLS RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFVF KFRTHFGGGK SSGFGLIYDT VESAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDA KKK

Arabidopsis Description

RPS24A40S ribosomal protein S24-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS17]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.