Factsheet for TraesCS7A01G356300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, nucleus

Predictor Summary:

mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	99.27	99.27
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	99.27	99.27
EER88512	Sorghum	mitochondrion	93.43	93.43
Zm00001d036985_P001	Maize	mitochondrion, plastid	91.24	91.24
Zm00001d039246_P001	Maize	mitochondrion	79.56	90.83
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	87.59	86.96
AT3G04920.1	Thale cress	mitochondrion	82.48	84.96
CDY59816	Canola	mitochondrion	82.48	84.96
CDY52499	Canola	mitochondrion	82.48	84.96
CDY50766	Canola	mitochondrion	82.48	84.96
CDY41909	Canola	mitochondrion	82.48	84.96
CDY30024	Canola	mitochondrion	82.48	84.96
CDY21104	Canola	mitochondrion	82.48	84.96
CDY05587	Canola	mitochondrion	82.48	84.96
CDY00010	Canola	extracellular	82.48	84.96
CDX86189	Canola	mitochondrion	82.48	84.96
CDX80683	Canola	mitochondrion	82.48	84.96
Bra040415.1-P	Field mustard	mitochondrion	82.48	84.96
Bra040115.1-P	Field mustard	mitochondrion	82.48	84.96
Bra036117.1-P	Field mustard	mitochondrion	82.48	84.96
Bra009989.1-P	Field mustard	mitochondrion	82.48	84.96
AT5G28060.1	Thale cress	mitochondrion	78.83	81.2
Solyc09g065330.2.1	Tomato	nucleus	78.83	81.2
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	78.83	81.2
Solyc01g097870.2.1	Tomato	mitochondrion	78.83	81.2
PGSC0003DMT400051640	Potato	extracellular	78.83	81.2
PGSC0003DMT400049836	Potato	mitochondrion	78.83	81.2
GSMUA_AchrUn_...	Banana	mitochondrion	71.53	79.03
GSMUA_Achr6P05510_001	Banana	mitochondrion	78.83	78.26
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	97.08	78.24
GSMUA_Achr4P30950_001	Banana	mitochondrion	70.8	78.23
GSMUA_Achr2P15660_001	Banana	mitochondrion	78.1	77.54
GSMUA_Achr9P28760_001	Banana	mitochondrion	78.1	77.54
KRG96941	Soybean	nucleus	77.37	77.37
KRH68706	Soybean	endoplasmic reticulum	76.64	76.64
CDX74161	Canola	mitochondrion	54.01	76.29
VIT_14s0030g01620.t01	Wine grape	mitochondrion	75.91	75.91
KRH34063	Soybean	mitochondrion	75.18	75.18
VIT_07s0151g00900.t01	Wine grape	mitochondrion	75.18	75.18
KRG92744	Soybean	mitochondrion	70.8	70.29
KRH04214	Soybean	cytosol	46.72	65.98
KRH04217	Soybean	mitochondrion	35.77	64.47
KRH64028	Soybean	mitochondrion	51.82	51.45
GSMUA_Achr8P20160_001	Banana	mitochondrion	54.74	37.88

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	HAMAP:MF_00545	PFAM:PD006052
PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF5	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e
InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	EnsemblPlantsGene:TraesCS7A01G356300	EnsemblPlants:TraesCS7A01G356300.1	SEG:seg	:

Description

No Description!

Coordinates

chr7A:+:521950034..521951978

Molecular Weight (calculated)

15730.5 Da

IEP (calculated)

11.418

GRAVY (calculated)

-0.762

Length

137 amino acids

Sequence
(BLAST)

001: MADAKTTTAV TLRTRKFMTN RLLARKQFVL EVIHPGRANV SKAELKERLA KVYEVKDPNC IFVFKFRTHF GGGKSSGFGL IYDNLESAKK FEPKYRLIRN
101: GLATKVEKSR KQIKERKNRT KKIRGVKKTK AGDAKKK

Best Arabidopsis Sequence Match ( AT3G04920.1 )
(BLAST)

001: MAEKAVTIRT RKFMTNRLLS RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFVF KFRTHFGGGK SSGFGLIYDT VESAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDA KKK

Arabidopsis Description

RPS24A40S ribosomal protein S24-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS17]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.