Factsheet for Solyc01g097870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g065330.2.1	Tomato	nucleus	98.5	98.5
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	97.74	97.74
AT3G04920.1	Thale cress	mitochondrion	90.98	90.98
CDY00010	Canola	extracellular	90.23	90.23
CDY59816	Canola	mitochondrion	90.23	90.23
CDY50766	Canola	mitochondrion	90.23	90.23
CDY41909	Canola	mitochondrion	90.23	90.23
CDY30024	Canola	mitochondrion	90.23	90.23
CDY21104	Canola	mitochondrion	90.23	90.23
CDX86189	Canola	mitochondrion	90.23	90.23
CDX80683	Canola	mitochondrion	90.23	90.23
Bra040115.1-P	Field mustard	mitochondrion	90.23	90.23
Bra036117.1-P	Field mustard	mitochondrion	90.23	90.23
Bra009989.1-P	Field mustard	mitochondrion	90.23	90.23
AT5G28060.1	Thale cress	mitochondrion	90.23	90.23
CDY05587	Canola	mitochondrion	89.47	89.47
Bra040415.1-P	Field mustard	mitochondrion	89.47	89.47
CDY52499	Canola	mitochondrion	89.47	89.47
GSMUA_AchrUn_...	Banana	mitochondrion	82.71	88.71
GSMUA_Achr6P05510_001	Banana	mitochondrion	89.47	86.23
GSMUA_Achr2P15660_001	Banana	mitochondrion	88.72	85.51
GSMUA_Achr9P28760_001	Banana	mitochondrion	88.72	85.51
GSMUA_Achr4P30950_001	Banana	mitochondrion	79.7	85.48
CDX74161	Canola	mitochondrion	61.65	84.54
Os06t0555400-01	Rice	cytosol, mitochondrion	72.93	84.35
Zm00001d011741_P001	Maize	plastid	85.71	83.21
Zm00001d043606_P001	Maize	mitochondrion	84.96	82.48
EES06539	Sorghum	mitochondrion, plastid	84.96	82.48
Zm00001d016276_P002	Maize	cytosol, mitochondrion	84.96	82.48
EES03542	Sorghum	mitochondrion	84.96	82.48
EER88512	Sorghum	mitochondrion	84.21	81.75
Zm00001d039246_P001	Maize	mitochondrion	73.68	81.67
Os01t0723200-01	Rice	nucleus	84.21	81.16
Os02t0229000-01	Rice	nucleus	83.46	80.43
Zm00001d036985_P001	Maize	mitochondrion, plastid	81.95	79.56
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	81.95	79.56
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	81.95	79.56
TraesCS7A01G356300.1	Wheat	golgi, nucleus, unclear	81.2	78.83
TraesCS6B01G234000.1	Wheat	golgi, unclear	80.45	78.1
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	80.45	77.54
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	80.45	77.54
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	79.7	76.81
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	81.2	75.0
HORVU3Hr1G068610.1	Barley	mitochondrion	74.44	72.26
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	54.14	67.92
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	80.45	62.94
HORVU6Hr1G044840.1	Barley	plasma membrane	79.7	59.55
HORVU2Hr1G055560.3	Barley	cytosol, mitochondrion	54.89	52.14
Zm00001d043381_P001	Maize	cytosol	33.08	48.35
GSMUA_Achr8P20160_001	Banana	mitochondrion	60.15	40.4

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	GO:GO:0000462	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	UniProt:K4B0H4	HAMAP:MF_00545	PFAM:PD006052
PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF9	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e
InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	EnsemblPlantsGene:Solyc01g097870.2	EnsemblPlants:Solyc01g097870.2.1	UniParc:UPI00027683DB	SEG:seg

Description

40S ribosomal protein S24 [Source:UniProtKB/TrEMBL;Acc:K4B0H4]

Coordinates

chr1:+:88570860..88573418

Molecular Weight (calculated)

15364.0 Da

IEP (calculated)

11.338

GRAVY (calculated)

-0.842

Length

133 amino acids

Sequence
(BLAST)

001: MADKAVTIRT RKFMTNRLLA RKQFIIDVLH PGRANVSKAE LKEKLARMYE VKDANAIFVF KFRTHFGGGK STGFGLIYDS VENAKKYEPK YRLIRNGLDT
101: KVEKSRKQMK ERKNRAKKVR GVKKTKAGDA KKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.