Factsheet for TraesCS6B01G234000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear

Predictor Summary:

mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	99.27	94.44
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	93.43	93.43
Os02t0229000-01	Rice	nucleus	92.7	92.03
Os06t0555400-01	Rice	cytosol, mitochondrion	76.64	91.3
Zm00001d016276_P002	Maize	cytosol, mitochondrion	91.24	91.24
EES06539	Sorghum	mitochondrion, plastid	91.24	91.24
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	88.32	87.68
CDY52499	Canola	mitochondrion	80.29	82.71
CDY59816	Canola	mitochondrion	80.29	82.71
CDY50766	Canola	mitochondrion	80.29	82.71
CDY41909	Canola	mitochondrion	80.29	82.71
CDY30024	Canola	mitochondrion	80.29	82.71
Bra036117.1-P	Field mustard	mitochondrion	80.29	82.71
AT3G04920.1	Thale cress	mitochondrion	80.29	82.71
Bra009989.1-P	Field mustard	mitochondrion	80.29	82.71
CDY21104	Canola	mitochondrion	80.29	82.71
Bra040115.1-P	Field mustard	mitochondrion	80.29	82.71
Bra040415.1-P	Field mustard	mitochondrion	80.29	82.71
CDX80683	Canola	mitochondrion	80.29	82.71
CDX86189	Canola	mitochondrion	80.29	82.71
CDY00010	Canola	extracellular	80.29	82.71
CDY05587	Canola	mitochondrion	80.29	82.71
Solyc01g097870.2.1	Tomato	mitochondrion	78.1	80.45
GSMUA_AchrUn_...	Banana	mitochondrion	72.26	79.84
Solyc09g065330.2.1	Tomato	nucleus	77.37	79.7
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	77.37	79.7
PGSC0003DMT400051640	Potato	extracellular	77.37	79.7
PGSC0003DMT400049836	Potato	mitochondrion	77.37	79.7
GSMUA_Achr6P05510_001	Banana	mitochondrion	78.83	78.26
AT5G28060.1	Thale cress	mitochondrion	75.91	78.2
GSMUA_Achr9P28760_001	Banana	mitochondrion	78.1	77.54
GSMUA_Achr2P15660_001	Banana	mitochondrion	78.1	77.54
GSMUA_Achr4P30950_001	Banana	mitochondrion	70.07	77.42
KRG96941	Soybean	nucleus	77.37	77.37
KRH68706	Soybean	endoplasmic reticulum	76.64	76.64
HORVU6Hr1G044840.1	Barley	plasma membrane	99.27	76.4
KRH34063	Soybean	mitochondrion	75.91	75.91
VIT_14s0030g01620.t01	Wine grape	mitochondrion	75.91	75.91
VIT_07s0151g00900.t01	Wine grape	mitochondrion	75.18	75.18
CDX74161	Canola	mitochondrion	52.55	74.23
KRG92744	Soybean	mitochondrion	71.53	71.01
KRH04214	Soybean	cytosol	47.45	67.01
KRH04217	Soybean	mitochondrion	36.5	65.79
KRH64028	Soybean	mitochondrion	52.55	52.17
GSMUA_Achr8P20160_001	Banana	mitochondrion	55.47	38.38

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	HAMAP:MF_00545	PFAM:PD006052
PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF9	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e
InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	EnsemblPlantsGene:TraesCS6B01G234000	EnsemblPlants:TraesCS6B01G234000.1	SEG:seg	:

Description

No Description!

Coordinates

chr6B:-:392489403..392491117

Molecular Weight (calculated)

15700.4 Da

IEP (calculated)

11.418

GRAVY (calculated)

-0.742

Length

137 amino acids

Sequence
(BLAST)

001: MADAKTAPAV TLRTRKFMTN RLLSRKQFVL EVIHPGRANV SKADLKERLA KIYEVKDSNC IFVFKFRTHF GGGKSTGFGL IYDNLEAAKK FEPKYRLIRN
101: GLATKVEKSR KQIKERKNRT KKIRGVKKTK AGDAKKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.