Factsheet for GSMUA_Achr6P05510_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P15660_001	Banana	mitochondrion	97.83	97.83
GSMUA_AchrUn_...	Banana	mitochondrion	86.96	96.77
GSMUA_Achr9P28760_001	Banana	mitochondrion	96.38	96.38
GSMUA_Achr4P30950_001	Banana	mitochondrion	85.51	95.16
KRG96941	Soybean	nucleus	90.58	91.24
KRH34063	Soybean	mitochondrion	89.13	89.78
KRH68706	Soybean	endoplasmic reticulum	89.13	89.78
VIT_14s0030g01620.t01	Wine grape	mitochondrion	89.13	89.78
Solyc01g097870.2.1	Tomato	mitochondrion	86.23	89.47
PGSC0003DMT400049836	Potato	mitochondrion	85.51	88.72
PGSC0003DMT400051640	Potato	extracellular	85.51	88.72
Solyc09g065330.2.1	Tomato	nucleus	85.51	88.72
VIT_07s0151g00900.t01	Wine grape	mitochondrion	87.68	88.32
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	84.78	87.97
Os06t0555400-01	Rice	cytosol, mitochondrion	72.46	86.96
AT3G04920.1	Thale cress	mitochondrion	83.33	86.47
CDY52499	Canola	mitochondrion	81.88	84.96
CDY59816	Canola	mitochondrion	81.88	84.96
CDY50766	Canola	mitochondrion	81.88	84.96
CDY41909	Canola	mitochondrion	81.88	84.96
CDY30024	Canola	mitochondrion	81.88	84.96
CDY21104	Canola	mitochondrion	81.88	84.96
CDY05587	Canola	mitochondrion	81.88	84.96
CDY00010	Canola	extracellular	81.88	84.96
CDX86189	Canola	mitochondrion	81.88	84.96
CDX80683	Canola	mitochondrion	81.88	84.96
Bra040115.1-P	Field mustard	mitochondrion	81.88	84.96
Bra036117.1-P	Field mustard	mitochondrion	81.88	84.96
Bra009989.1-P	Field mustard	mitochondrion	81.88	84.96
AT5G28060.1	Thale cress	mitochondrion	81.16	84.21
Bra040415.1-P	Field mustard	mitochondrion	81.16	84.21
Os02t0229000-01	Rice	nucleus	82.61	82.61
Zm00001d011741_P001	Maize	plastid	81.88	82.48
Zm00001d043606_P001	Maize	mitochondrion	81.88	82.48
EES03542	Sorghum	mitochondrion	81.88	82.48
Os01t0723200-01	Rice	nucleus	81.88	81.88
EER88512	Sorghum	mitochondrion	81.16	81.75
Zm00001d016276_P002	Maize	cytosol, mitochondrion	81.16	81.75
Zm00001d039246_P001	Maize	mitochondrion	71.01	81.67
EES06539	Sorghum	mitochondrion, plastid	80.43	81.02
KRG92744	Soybean	mitochondrion	80.43	80.43
CDX74161	Canola	mitochondrion	56.52	80.41
KRH04214	Soybean	cytosol	56.52	80.41
Zm00001d036985_P001	Maize	mitochondrion, plastid	78.99	79.56
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	78.26	78.83
TraesCS6B01G234000.1	Wheat	golgi, unclear	78.26	78.83
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	78.26	78.83
TraesCS7A01G356300.1	Wheat	golgi, nucleus, unclear	78.26	78.83
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	77.54	77.54
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	77.54	77.54
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	76.81	76.81
KRH04217	Soybean	mitochondrion	42.03	76.32
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	78.99	75.69
HORVU3Hr1G068610.1	Barley	mitochondrion	73.19	73.72
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	51.45	66.98
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	76.81	62.35
HORVU6Hr1G044840.1	Barley	plasma membrane	77.54	60.11
KRH64028	Soybean	mitochondrion	56.52	56.52
HORVU2Hr1G055560.3	Barley	cytosol, mitochondrion	52.9	52.14
Zm00001d043381_P001	Maize	cytosol	31.88	48.35
GSMUA_Achr8P20160_001	Banana	mitochondrion	65.22	45.45

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr6G05510_001	EnsemblPlants:GSMUA_Achr6P05510_001	EnsemblPlants:GSMUA_Achr6T05510_001	UniProt:M0T4E9	HAMAP:MF_00545	PFAM:PD006052
PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF5	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e
InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	UniParc:UPI0002960940	SEG:seg	:	:

Description

40S ribosomal protein S24-2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G05510_001]

Coordinates

chr6:-:3717027..3719660

Molecular Weight (calculated)

15764.5 Da

IEP (calculated)

11.361

GRAVY (calculated)

-0.819

Length

138 amino acids

Sequence
(BLAST)

001: MADTKAVTIR TRKFMTNRLL SRKQFVIDVL HPGRANVSKA ELKEKLAKLY EVNDTNTIFV FKFRTHFGGG KSTGFGLIYD TVENAKKYEP KYRLIRNGLA
101: TKVEKSRKQM KERKNRAKKV RGVKKTKAGD AAKAGKKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.