CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96941	Soybean	nucleus	98.54	98.54
KRH34063	Soybean	mitochondrion	97.08	97.08
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	88.32	90.98
VIT_14s0030g01620.t01	Wine grape	mitochondrion	90.51	90.51
GSMUA_AchrUn_...	Banana	mitochondrion	81.75	90.32
PGSC0003DMT400051640	Potato	extracellular	87.59	90.23
Solyc09g065330.2.1	Tomato	nucleus	87.59	90.23
PGSC0003DMT400049836	Potato	mitochondrion	87.59	90.23
AT3G04920.1	Thale cress	mitochondrion	86.86	89.47
GSMUA_Achr9P28760_001	Banana	mitochondrion	89.78	89.13
GSMUA_Achr6P05510_001	Banana	mitochondrion	89.78	89.13
GSMUA_Achr4P30950_001	Banana	mitochondrion	80.29	88.71
GSMUA_Achr2P15660_001	Banana	mitochondrion	89.05	88.41
CDX86189	Canola	mitochondrion	85.4	87.97
Bra009989.1-P	Field mustard	mitochondrion	85.4	87.97
Bra036117.1-P	Field mustard	mitochondrion	85.4	87.97
Bra040115.1-P	Field mustard	mitochondrion	85.4	87.97
Bra040415.1-P	Field mustard	mitochondrion	85.4	87.97
CDX80683	Canola	mitochondrion	85.4	87.97
CDY59816	Canola	mitochondrion	85.4	87.97
CDY50766	Canola	mitochondrion	85.4	87.97
CDY41909	Canola	mitochondrion	85.4	87.97
CDY30024	Canola	mitochondrion	85.4	87.97
CDY21104	Canola	mitochondrion	85.4	87.97
CDY00010	Canola	extracellular	85.4	87.97
CDY52499	Canola	mitochondrion	84.67	87.22
CDY05587	Canola	mitochondrion	84.67	87.22
KRG92744	Soybean	mitochondrion	87.59	86.96
AT5G28060.1	Thale cress	mitochondrion	83.94	86.47
KRH04214	Soybean	cytosol	59.85	84.54
KRH04217	Soybean	mitochondrion	46.72	84.21
Os06t0555400-01	Rice	cytosol, mitochondrion	70.07	83.48
CDX74161	Canola	mitochondrion	58.39	82.47
Zm00001d011741_P001	Maize	plastid	81.75	81.75
Zm00001d016276_P002	Maize	cytosol, mitochondrion	81.02	81.02
Zm00001d043606_P001	Maize	mitochondrion	81.02	81.02
EES03542	Sorghum	mitochondrion	81.02	81.02
EES06539	Sorghum	mitochondrion, plastid	80.29	80.29
Zm00001d039246_P001	Maize	mitochondrion	70.07	80.0
Os01t0723200-01	Rice	nucleus	80.29	79.71
Os02t0229000-01	Rice	nucleus	80.29	79.71
EER88512	Sorghum	mitochondrion	78.83	78.83
Zm00001d036985_P001	Maize	mitochondrion, plastid	78.83	78.83
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	78.83	78.26
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	78.83	78.26
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	78.1	77.54
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	77.37	77.37
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	77.37	77.37
TraesCS6B01G234000.1	Wheat	golgi, unclear	76.64	76.64
TraesCS7A01G356300.1	Wheat	golgi, nucleus, unclear	76.64	76.64
HORVU3Hr1G068610.1	Barley	mitochondrion	74.45	74.45
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	77.37	73.61
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	52.55	67.92
KRH64028	Soybean	mitochondrion	62.04	61.59
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	75.91	61.18
HORVU6Hr1G044840.1	Barley	plasma membrane	75.91	58.43
HORVU2Hr1G055560.3	Barley	cytosol, mitochondrion	52.55	51.43
Zm00001d043381_P001	Maize	cytosol	32.12	48.35
GSMUA_Achr8P20160_001	Banana	mitochondrion	59.12	40.91

Protein Annotations

EntrezGene:100499852	MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	EMBL:ACUP02002121	EMBL:BT089827	UniProt:C6SXD3
EnsemblPlantsGene:GLYMA_03G245300	GO:GO:0000462	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022627	GO:GO:0030529	EnsemblPlants:KRH68706	ProteinID:KRH68706	ProteinID:KRH68706.1	HAMAP:MF_00545
PFAM:PD006052	PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF5	InterPro:Ribosomal_L23/L15e_core_dom_sf
InterPro:Ribosomal_S24e	InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	UniParc:UPI00018C65EB	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:44255442..44257376

Molecular Weight (calculated)

15797.5 Da

IEP (calculated)

11.356

GRAVY (calculated)

-0.908

Length

137 amino acids

Sequence
(BLAST)

001: MADKAVTIRT RKFMTNRLLS RKQFVVDVLH PGRANVSKAE LKEKLARMYD VKDPNTVFVF KFRTHFGGGK STGFGLIYDT MENAKKYEPK YRLIRNGLDT
101: KVEKSRKQMK ERKNRAKKIR GVKKTKASDA AKAGKKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.