CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68706	Soybean	endoplasmic reticulum	98.54	98.54
KRH34063	Soybean	mitochondrion	97.08	97.08
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	89.78	92.48
VIT_14s0030g01620.t01	Wine grape	mitochondrion	91.97	91.97
GSMUA_AchrUn_...	Banana	mitochondrion	83.21	91.94
Solyc09g065330.2.1	Tomato	nucleus	89.05	91.73
PGSC0003DMT400051640	Potato	extracellular	89.05	91.73
PGSC0003DMT400049836	Potato	mitochondrion	89.05	91.73
AT3G04920.1	Thale cress	mitochondrion	88.32	90.98
GSMUA_Achr9P28760_001	Banana	mitochondrion	91.24	90.58
GSMUA_Achr6P05510_001	Banana	mitochondrion	91.24	90.58
GSMUA_Achr4P30950_001	Banana	mitochondrion	81.75	90.32
GSMUA_Achr2P15660_001	Banana	mitochondrion	90.51	89.86
CDY50766	Canola	mitochondrion	86.86	89.47
CDY59816	Canola	mitochondrion	86.86	89.47
Bra036117.1-P	Field mustard	mitochondrion	86.86	89.47
CDY41909	Canola	mitochondrion	86.86	89.47
CDY30024	Canola	mitochondrion	86.86	89.47
CDY21104	Canola	mitochondrion	86.86	89.47
CDY00010	Canola	extracellular	86.86	89.47
CDX86189	Canola	mitochondrion	86.86	89.47
CDX80683	Canola	mitochondrion	86.86	89.47
Bra009989.1-P	Field mustard	mitochondrion	86.86	89.47
Bra040115.1-P	Field mustard	mitochondrion	86.86	89.47
CDY52499	Canola	mitochondrion	86.13	88.72
CDY05587	Canola	mitochondrion	86.13	88.72
Bra040415.1-P	Field mustard	mitochondrion	86.13	88.72
AT5G28060.1	Thale cress	mitochondrion	85.4	87.97
KRG92744	Soybean	mitochondrion	87.59	86.96
CDX74161	Canola	mitochondrion	59.85	84.54
Os06t0555400-01	Rice	cytosol, mitochondrion	70.8	84.35
KRH04214	Soybean	cytosol	59.12	83.51
KRH04217	Soybean	mitochondrion	45.99	82.89
Zm00001d011741_P001	Maize	plastid	82.48	82.48
Zm00001d016276_P002	Maize	cytosol, mitochondrion	82.48	82.48
Zm00001d043606_P001	Maize	mitochondrion	81.75	81.75
EES03542	Sorghum	mitochondrion	81.75	81.75
EES06539	Sorghum	mitochondrion, plastid	81.02	81.02
Zm00001d039246_P001	Maize	mitochondrion	70.8	80.83
Os01t0723200-01	Rice	nucleus	81.02	80.43
Os02t0229000-01	Rice	nucleus	81.02	80.43
EER88512	Sorghum	mitochondrion	79.56	79.56
Zm00001d036985_P001	Maize	mitochondrion, plastid	79.56	79.56
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	78.1	78.1
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	78.1	78.1
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	78.1	77.54
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	78.1	77.54
TraesCS6B01G234000.1	Wheat	golgi, unclear	77.37	77.37
TraesCS7A01G356300.1	Wheat	golgi, nucleus, unclear	77.37	77.37
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	77.37	76.81
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	78.1	74.31
HORVU3Hr1G068610.1	Barley	mitochondrion	73.72	73.72
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	52.55	67.92
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	76.64	61.76
KRH64028	Soybean	mitochondrion	62.04	61.59
HORVU6Hr1G044840.1	Barley	plasma membrane	76.64	58.99
HORVU2Hr1G055560.3	Barley	cytosol, mitochondrion	53.28	52.14
Zm00001d043381_P001	Maize	cytosol	32.12	48.35
GSMUA_Achr8P20160_001	Banana	mitochondrion	59.85	41.41

Protein Annotations

EntrezGene:100802918	MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	EMBL:ACUP02012169	EMBL:BT094655	UniProt:C6TAW2
EnsemblPlantsGene:GLYMA_19G242700	GO:GO:0000462	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022627	GO:GO:0030529	EnsemblPlants:KRG96941	ProteinID:KRG96941	ProteinID:KRG96941.1	HAMAP:MF_00545
PFAM:PD006052	PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF5	InterPro:Ribosomal_L23/L15e_core_dom_sf
InterPro:Ribosomal_S24e	InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	UniParc:UPI00018C65EC	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:-:49035468..49037343

Molecular Weight (calculated)

15779.5 Da

IEP (calculated)

11.356

GRAVY (calculated)

-0.891

Length

137 amino acids

Sequence
(BLAST)

001: MADKAVTIRT RKFMTNRLLS RKQFVVDVLH PGRANVSKAE LKEKLARMYE VKDPNTVFVF KFRTHFGGGK STGFGLIYDT VENAKKYEPK YRLIRNGLDT
101: KVEKSRKQMK ERKNRAKKIR GVKKTKASDA AKAGKKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.