Factsheet for HORVU2Hr1G055560.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 3
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	62.14	82.08
CDX74161	Canola	mitochondrion	49.29	71.13
KRH04217	Soybean	mitochondrion	36.43	67.11
CDY30024	Canola	mitochondrion	55.0	57.89
CDY59816	Canola	mitochondrion	55.0	57.89
CDY50766	Canola	mitochondrion	55.0	57.89
CDY41909	Canola	mitochondrion	55.0	57.89
CDY21104	Canola	mitochondrion	55.0	57.89
CDY00010	Canola	extracellular	55.0	57.89
CDX86189	Canola	mitochondrion	55.0	57.89
CDX80683	Canola	mitochondrion	55.0	57.89
Bra040415.1-P	Field mustard	mitochondrion	55.0	57.89
Bra040115.1-P	Field mustard	mitochondrion	55.0	57.89
Bra036117.1-P	Field mustard	mitochondrion	55.0	57.89
Bra009989.1-P	Field mustard	mitochondrion	55.0	57.89
CDY05587	Canola	mitochondrion	54.29	57.14
CDY52499	Canola	mitochondrion	54.29	57.14
Zm00001d043381_P001	Maize	cytosol	37.14	57.14
AT3G04920.1	Thale cress	mitochondrion	54.29	57.14
AT5G28060.1	Thale cress	mitochondrion	53.57	56.39
Solyc09g065330.2.1	Tomato	nucleus	53.57	56.39
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	53.57	56.39
PGSC0003DMT400051640	Potato	extracellular	53.57	56.39
PGSC0003DMT400049836	Potato	mitochondrion	53.57	56.39
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	67.14	55.29
Solyc01g097870.2.1	Tomato	mitochondrion	52.14	54.89
HORVU3Hr1G068610.1	Barley	mitochondrion	52.86	54.01
KRG96941	Soybean	nucleus	52.14	53.28
GSMUA_Achr6P05510_001	Banana	mitochondrion	52.14	52.9
KRH68706	Soybean	endoplasmic reticulum	51.43	52.55
GSMUA_Achr2P15660_001	Banana	mitochondrion	51.43	52.17
GSMUA_Achr9P28760_001	Banana	mitochondrion	51.43	52.17
KRH34063	Soybean	mitochondrion	50.71	51.82
VIT_14s0030g01620.t01	Wine grape	mitochondrion	50.71	51.82
GSMUA_AchrUn_...	Banana	mitochondrion	45.71	51.61
GSMUA_Achr4P30950_001	Banana	mitochondrion	45.71	51.61
VIT_07s0151g00900.t01	Wine grape	mitochondrion	50.0	51.09
KRG92744	Soybean	mitochondrion	50.0	50.72
HORVU6Hr1G044840.1	Barley	plasma membrane	61.43	48.31
KRH04214	Soybean	cytosol	29.29	42.27
KRH64028	Soybean	mitochondrion	35.71	36.23
GSMUA_Achr8P20160_001	Banana	mitochondrion	32.14	22.73

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	UniProt:A0A287I1L8	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU2Hr1G055560
EnsemblPlants:HORVU2Hr1G055560.3	HAMAP:MF_00545	PFAM:PD006052	PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496
PANTHER:PTHR10496:SF5	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e	InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	UniParc:UPI000B468177

Description

40S ribosomal protein S24 [Source:UniProtKB/TrEMBL;Acc:A0A287I1L8]

Coordinates

chrchr2H:-:345144073..345144581

Molecular Weight (calculated)

15974.9 Da

IEP (calculated)

11.213

GRAVY (calculated)

0.008

Length

140 amino acids

Sequence
(BLAST)

001: MADAKATTAV TLRTRIFMTN RLLARKQFVL EVIHPGRANV SKAELKERLS KVYEVKDPNC IFVFKFRTHF GGGKSSGFGL IYNNLKAGKK FEPKYRLIRV
101: WIFLPLSLPH MELRCIVSSR RALVFGSAVL THGLRCSNLY

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.