Factsheet for GSMUA_Achr8P20160_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P05510_001	Banana	mitochondrion	45.45	65.22
GSMUA_Achr2P15660_001	Banana	mitochondrion	45.45	65.22
GSMUA_Achr9P28760_001	Banana	mitochondrion	44.95	64.49
GSMUA_AchrUn_...	Banana	mitochondrion	38.38	61.29
AT3G04920.1	Thale cress	mitochondrion	40.91	60.9
CDY30024	Canola	mitochondrion	40.4	60.15
Solyc01g097870.2.1	Tomato	mitochondrion	40.4	60.15
CDY59816	Canola	mitochondrion	40.4	60.15
CDY52499	Canola	mitochondrion	40.4	60.15
CDY50766	Canola	mitochondrion	40.4	60.15
CDY41909	Canola	mitochondrion	40.4	60.15
CDY21104	Canola	mitochondrion	40.4	60.15
CDY05587	Canola	mitochondrion	40.4	60.15
CDY00010	Canola	extracellular	40.4	60.15
CDX86189	Canola	mitochondrion	40.4	60.15
CDX80683	Canola	mitochondrion	40.4	60.15
Bra040415.1-P	Field mustard	mitochondrion	40.4	60.15
Bra040115.1-P	Field mustard	mitochondrion	40.4	60.15
Bra036117.1-P	Field mustard	mitochondrion	40.4	60.15
Bra009989.1-P	Field mustard	mitochondrion	40.4	60.15
KRG96941	Soybean	nucleus	41.41	59.85
GSMUA_Achr4P30950_001	Banana	mitochondrion	37.37	59.68
PGSC0003DMT400051640	Potato	extracellular	39.9	59.4
Solyc09g065330.2.1	Tomato	nucleus	39.9	59.4
PGSC0003DMT400049836	Potato	mitochondrion	39.9	59.4
VIT_14s0030g01620.t01	Wine grape	mitochondrion	40.91	59.12
KRH68706	Soybean	endoplasmic reticulum	40.91	59.12
Os01t0723200-01	Rice	nucleus	40.91	58.7
Os02t0229000-01	Rice	nucleus	40.91	58.7
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	39.39	58.65
KRH34063	Soybean	mitochondrion	40.4	58.39
VIT_07s0151g00900.t01	Wine grape	mitochondrion	40.4	58.39
AT5G28060.1	Thale cress	mitochondrion	38.89	57.89
Os06t0555400-01	Rice	cytosol, mitochondrion	33.33	57.39
EES06539	Sorghum	mitochondrion, plastid	39.39	56.93
Zm00001d016276_P002	Maize	cytosol, mitochondrion	39.39	56.93
Zm00001d036985_P001	Maize	mitochondrion, plastid	39.39	56.93
Zm00001d011741_P001	Maize	plastid	38.89	56.2
Zm00001d043606_P001	Maize	mitochondrion	38.89	56.2
EER88512	Sorghum	mitochondrion	38.89	56.2
EES03542	Sorghum	mitochondrion	38.89	56.2
Zm00001d039246_P001	Maize	mitochondrion	33.84	55.83
TraesCS6B01G234000.1	Wheat	golgi, unclear	38.38	55.47
TraesCS7A01G356300.1	Wheat	golgi, nucleus, unclear	37.88	54.74
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	37.88	54.74
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	37.88	54.74
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	38.89	53.47
KRG92744	Soybean	mitochondrion	36.87	52.9
KRH04214	Soybean	cytosol	25.76	52.58
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	36.36	52.17
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	36.36	52.17
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	36.36	52.17
CDX74161	Canola	mitochondrion	25.25	51.55
KRH04217	Soybean	mitochondrion	19.7	51.32
HORVU3Hr1G068610.1	Barley	mitochondrion	34.85	50.37
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	36.87	42.94
HORVU6Hr1G044840.1	Barley	plasma membrane	37.88	42.13
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	22.22	41.51
KRH64028	Soybean	mitochondrion	22.73	32.61
HORVU2Hr1G055560.3	Barley	cytosol, mitochondrion	22.73	32.14
Zm00001d043381_P001	Maize	cytosol	10.1	21.98

Protein Annotations

Gene3D:3.30.70.3370	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr8G20160_001	EnsemblPlants:GSMUA_Achr8P20160_001	EnsemblPlants:GSMUA_Achr8T20160_001	UniProt:M0TS19	PFAM:PD006052
PFAM:PF01282	PANTHER:PTHR10496	PANTHER:PTHR10496:SF9	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e	SUPFAM:SSF54189
TMHMM:TMhelix	UniParc:UPI000294A1B5	SEG:seg	:	:	:

Description

40S ribosomal protein S24-1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G20160_001]

Coordinates

chr8:+:25207539..25210212

Molecular Weight (calculated)

22803.3 Da

IEP (calculated)

10.791

GRAVY (calculated)

-0.058

Length

198 amino acids

Sequence
(BLAST)

001: MADAKAVTIR TRKFMTNRLL SRKQFVIDVL HPGRTNVSKA ELKEKLAKLY EVSIRTRSSC SNRLIRNGLA TKVEKSRKQL KERKNRAKKV CGVKKTKAGD
101: AAEAWVGQSI ILASIESGHS CALIYLSCEI LIPRTKMIFA SECRNVLVWC LVFSLSFTRS TMSVSLMLFI LKWIHHWIDY YEFNGRIWHG FLHQLIDL

Best Arabidopsis Sequence Match ( AT3G04920.1 )
(BLAST)

001: MAEKAVTIRT RKFMTNRLLS RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFVF KFRTHFGGGK SSGFGLIYDT VESAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDA KKK

Arabidopsis Description

RPS24A40S ribosomal protein S24-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS17]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.