Factsheet for TraesCS3B01G320300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	98.55	98.55
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	98.55	98.55
Os01t0723200-01	Rice	nucleus	89.86	89.86
TraesCS6B01G234000.1	Wheat	golgi, unclear	87.68	88.32
Zm00001d043606_P001	Maize	mitochondrion	86.96	87.59
HORVU3Hr1G068610.1	Barley	mitochondrion	86.96	87.59
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	86.96	87.59
EES03542	Sorghum	mitochondrion	86.96	87.59
Zm00001d011741_P001	Maize	plastid	86.96	87.59
CDY00010	Canola	extracellular	77.54	80.45
Bra009989.1-P	Field mustard	mitochondrion	77.54	80.45
AT3G04920.1	Thale cress	mitochondrion	77.54	80.45
Solyc01g097870.2.1	Tomato	mitochondrion	77.54	80.45
Bra036117.1-P	Field mustard	mitochondrion	77.54	80.45
Bra040115.1-P	Field mustard	mitochondrion	77.54	80.45
Bra040415.1-P	Field mustard	mitochondrion	77.54	80.45
CDX80683	Canola	mitochondrion	77.54	80.45
CDY59816	Canola	mitochondrion	77.54	80.45
CDY50766	Canola	mitochondrion	77.54	80.45
CDY41909	Canola	mitochondrion	77.54	80.45
CDY30024	Canola	mitochondrion	77.54	80.45
CDY21104	Canola	mitochondrion	77.54	80.45
CDX86189	Canola	mitochondrion	77.54	80.45
CDY52499	Canola	mitochondrion	76.81	79.7
CDY05587	Canola	mitochondrion	76.81	79.7
GSMUA_AchrUn_...	Banana	mitochondrion	71.01	79.03
PGSC0003DMT400049836	Potato	mitochondrion	76.09	78.95
PGSC0003DMT400051640	Potato	extracellular	76.09	78.95
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	76.09	78.95
Solyc09g065330.2.1	Tomato	nucleus	76.09	78.95
VIT_14s0030g01620.t01	Wine grape	mitochondrion	78.26	78.83
KRH68706	Soybean	endoplasmic reticulum	78.26	78.83
KRG96941	Soybean	nucleus	77.54	78.1
KRH34063	Soybean	mitochondrion	77.54	78.1
VIT_07s0151g00900.t01	Wine grape	mitochondrion	77.54	78.1
GSMUA_Achr9P28760_001	Banana	mitochondrion	77.54	77.54
GSMUA_Achr6P05510_001	Banana	mitochondrion	77.54	77.54
GSMUA_Achr2P15660_001	Banana	mitochondrion	76.81	76.81
AT5G28060.1	Thale cress	mitochondrion	73.91	76.69
GSMUA_Achr4P30950_001	Banana	mitochondrion	68.84	76.61
CDX74161	Canola	mitochondrion	51.45	73.2
KRG92744	Soybean	mitochondrion	72.46	72.46
KRH04214	Soybean	cytosol	49.28	70.1
KRH04217	Soybean	mitochondrion	38.41	69.74
KRH64028	Soybean	mitochondrion	52.9	52.9
GSMUA_Achr8P20160_001	Banana	mitochondrion	52.17	36.36

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	HAMAP:MF_00545	PFAM:PD006052
PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF9	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e
InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	EnsemblPlantsGene:TraesCS3B01G320300	EnsemblPlants:TraesCS3B01G320300.1	SEG:seg	:

Description

No Description!

Coordinates

chr3B:+:519397654..519399693

Molecular Weight (calculated)

15698.5 Da

IEP (calculated)

11.319

GRAVY (calculated)

-0.750

Length

138 amino acids

Sequence
(BLAST)

001: MADSKASAAV TLRTRKFMTN RLLSRKQFVL EVIHPGKANV PKAELKDKLA KMYDVKDANC IFVFKFRTHF GGGKSTGFGL IYDNLEAAKK LEPKYRLIRN
101: GLATKVEKSR KQIKERKNRS KKIRGVKKTK ADAGKKKK

Best Arabidopsis Sequence Match ( AT3G04920.2 )
(BLAST)

001: MAEKAVTIRT RKFMTNRLLS RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFVF KFRTHFGGGK SSGFGLIYDT VESAKKFEPK YRLIRVNAFS
101: TLVSIVIYCY SH

Arabidopsis Description

RPS24A40S ribosomal protein S24-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS17]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.