Factsheet for Zm00001d043606_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES03542	Sorghum	mitochondrion	99.27	99.27
Zm00001d011741_P001	Maize	plastid	98.54	98.54
Zm00001d036985_P001	Maize	mitochondrion, plastid	94.16	94.16
Zm00001d039246_P001	Maize	mitochondrion	81.02	92.5
Zm00001d016276_P002	Maize	cytosol, mitochondrion	91.97	91.97
Os01t0723200-01	Rice	nucleus	91.24	90.58
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	87.59	86.96
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	87.59	86.96
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	87.59	86.96
CDY59816	Canola	mitochondrion	82.48	84.96
Solyc09g065330.2.1	Tomato	nucleus	82.48	84.96
AT3G04920.1	Thale cress	mitochondrion	82.48	84.96
PGSC0003DMT400049836	Potato	mitochondrion	82.48	84.96
PGSC0003DMT400051640	Potato	extracellular	82.48	84.96
Solyc01g097870.2.1	Tomato	mitochondrion	82.48	84.96
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	82.48	84.96
CDY50766	Canola	mitochondrion	82.48	84.96
CDY41909	Canola	mitochondrion	82.48	84.96
Bra009989.1-P	Field mustard	mitochondrion	82.48	84.96
CDY30024	Canola	mitochondrion	82.48	84.96
CDY21104	Canola	mitochondrion	82.48	84.96
CDY00010	Canola	extracellular	82.48	84.96
CDX86189	Canola	mitochondrion	82.48	84.96
CDX80683	Canola	mitochondrion	82.48	84.96
Bra040415.1-P	Field mustard	mitochondrion	82.48	84.96
Bra040115.1-P	Field mustard	mitochondrion	82.48	84.96
Bra036117.1-P	Field mustard	mitochondrion	82.48	84.96
CDY05587	Canola	mitochondrion	81.75	84.21
CDY52499	Canola	mitochondrion	81.75	84.21
GSMUA_AchrUn_...	Banana	mitochondrion	75.18	83.06
GSMUA_Achr4P30950_001	Banana	mitochondrion	74.45	82.26
AT5G28060.1	Thale cress	mitochondrion	79.56	81.95
GSMUA_Achr6P05510_001	Banana	mitochondrion	82.48	81.88
KRG96941	Soybean	nucleus	81.75	81.75
GSMUA_Achr9P28760_001	Banana	mitochondrion	81.75	81.16
GSMUA_Achr2P15660_001	Banana	mitochondrion	81.75	81.16
HORVU3Hr1G068610.1	Barley	mitochondrion	81.02	81.02
KRH68706	Soybean	endoplasmic reticulum	81.02	81.02
KRH34063	Soybean	mitochondrion	79.56	79.56
VIT_07s0151g00900.t01	Wine grape	mitochondrion	78.83	78.83
VIT_14s0030g01620.t01	Wine grape	mitochondrion	78.83	78.83
CDX74161	Canola	mitochondrion	54.74	77.32
KRG92744	Soybean	mitochondrion	75.18	74.64
KRH04214	Soybean	cytosol	49.63	70.1
KRH04217	Soybean	mitochondrion	37.96	68.42
Zm00001d043381_P001	Maize	cytosol	38.69	58.24
KRH64028	Soybean	mitochondrion	52.55	52.17
GSMUA_Achr8P20160_001	Banana	mitochondrion	56.2	38.89

Protein Annotations

EntrezGene:100284180	MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	EMBL:BT069951	UniProt:C0PNT2	ncoils:Coil
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	HAMAP:MF_00545	ProteinID:ONM38565.1	PFAM:PD006052
PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF5	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e
InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	UniParc:UPI00000467FF	EnsemblPlantsGene:Zm00001d043606	EnsemblPlants:Zm00001d043606_P001	EnsemblPlants:Zm00001d043606_T001
SEG:seg	:	:	:	:	:

Description

40S ribosomal protein S24

Coordinates

chr3:+:204988866..204994150

Molecular Weight (calculated)

15658.4 Da

IEP (calculated)

11.509

GRAVY (calculated)

-0.785

Length

137 amino acids

Sequence
(BLAST)

001: MADSKATSAV TLRTRKFMTN RLLARKQFVL EVIHPGRANV SKAELKERLA KAYEVKDPNT IFVFKFRTHF GGGKSTGFGL IYDNLEAAKK FEPKYRLIRN
101: GLATKVEKSR KQMKERKNRA KKIRGVKKTK AGDAKKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.