Factsheet for Os01t0723200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18557835
nucleus: 19621931
nucleus: 23777608
nucleus: 26035336
plasma membrane: 27800704

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0555400-01	Rice	cytosol, mitochondrion	80.43	96.52
Os02t0229000-01	Rice	nucleus	94.2	94.2
Zm00001d043606_P001	Maize	mitochondrion	90.58	91.24
EES03542	Sorghum	mitochondrion	90.58	91.24
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	90.58	90.58
Zm00001d011741_P001	Maize	plastid	89.86	90.51
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	89.86	89.86
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	89.13	89.13
Solyc01g097870.2.1	Tomato	mitochondrion	81.16	84.21
GSMUA_AchrUn_...	Banana	mitochondrion	75.36	83.87
Bra009989.1-P	Field mustard	mitochondrion	79.71	82.71
Bra040415.1-P	Field mustard	mitochondrion	79.71	82.71
Solyc09g065330.2.1	Tomato	nucleus	79.71	82.71
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	79.71	82.71
Bra040115.1-P	Field mustard	mitochondrion	79.71	82.71
PGSC0003DMT400051640	Potato	extracellular	79.71	82.71
PGSC0003DMT400049836	Potato	mitochondrion	79.71	82.71
CDX80683	Canola	mitochondrion	79.71	82.71
CDX86189	Canola	mitochondrion	79.71	82.71
Bra036117.1-P	Field mustard	mitochondrion	79.71	82.71
AT3G04920.1	Thale cress	mitochondrion	79.71	82.71
CDY21104	Canola	mitochondrion	79.71	82.71
CDY30024	Canola	mitochondrion	79.71	82.71
CDY41909	Canola	mitochondrion	79.71	82.71
CDY50766	Canola	mitochondrion	79.71	82.71
CDY59816	Canola	mitochondrion	79.71	82.71
CDY00010	Canola	extracellular	79.71	82.71
HORVU3Hr1G068610.1	Barley	mitochondrion	81.88	82.48
CDY52499	Canola	mitochondrion	78.99	81.95
CDY05587	Canola	mitochondrion	78.99	81.95
GSMUA_Achr6P05510_001	Banana	mitochondrion	81.88	81.88
GSMUA_Achr4P30950_001	Banana	mitochondrion	73.19	81.45
GSMUA_Achr2P15660_001	Banana	mitochondrion	81.16	81.16
GSMUA_Achr9P28760_001	Banana	mitochondrion	81.16	81.16
KRG96941	Soybean	nucleus	80.43	81.02
KRH68706	Soybean	endoplasmic reticulum	79.71	80.29
VIT_07s0151g00900.t01	Wine grape	mitochondrion	79.71	80.29
VIT_14s0030g01620.t01	Wine grape	mitochondrion	79.71	80.29
KRH34063	Soybean	mitochondrion	78.99	79.56
AT5G28060.1	Thale cress	mitochondrion	75.36	78.2
CDX74161	Canola	mitochondrion	52.9	75.26
KRG92744	Soybean	mitochondrion	74.64	74.64
KRH04214	Soybean	cytosol	50.0	71.13
KRH04217	Soybean	mitochondrion	38.41	69.74
KRH64028	Soybean	mitochondrion	53.62	53.62
GSMUA_Achr8P20160_001	Banana	mitochondrion	58.7	40.91

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	EntrezGene:4324671	EMBL:AK063794	EMBL:AK122140	ProteinID:BAB84441.1
ProteinID:BAB89495.1	ProteinID:BAF06020.1	ProteinID:BAS74105.1	ncoils:Coil	GO:GO:0000462	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	HAMAP:MF_00545	EnsemblPlantsGene:Os01g0723200
EnsemblPlants:Os01t0723200-01	PFAM:PD006052	PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF9
UniProt:Q8W0C2	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e	InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	UniParc:UPI00000A4377
RefSeq:XP_015614819.1	SEG:seg	:	:	:	:

Description

Similar to 40S ribosomal protein S19-like. (Os01t0723200-01)

Coordinates

chr1:-:30157961..30159769

Molecular Weight (calculated)

15719.5 Da

IEP (calculated)

11.283

GRAVY (calculated)

-0.771

Length

138 amino acids

Sequence
(BLAST)

001: MSDSKAAAAV TLRTRKFMTN RLLSRKQFVL EVIHPGRPNV SKAELKEKLA KLYEVKDANC IFVFKFRTHF GGGKSTGFGL IYDNLDAAKK YEPKYRLIRN
101: GLATKVEKSR KQMKERKNRA KKIRGVKKTK AGDAGKKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.