CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74161	Canola	mitochondrion	72.37	56.7
KRH04214	Soybean	cytosol	65.79	51.55
KRH34063	Soybean	mitochondrion	85.53	47.45
KRH68706	Soybean	endoplasmic reticulum	84.21	46.72
KRG92744	Soybean	mitochondrion	84.21	46.38
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	64.47	46.23
KRG96941	Soybean	nucleus	82.89	45.99
CDY41909	Canola	mitochondrion	80.26	45.86
Solyc09g065330.2.1	Tomato	nucleus	80.26	45.86
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	80.26	45.86
PGSC0003DMT400051640	Potato	extracellular	80.26	45.86
AT3G04920.1	Thale cress	mitochondrion	80.26	45.86
CDY59816	Canola	mitochondrion	80.26	45.86
CDY50766	Canola	mitochondrion	80.26	45.86
CDY30024	Canola	mitochondrion	80.26	45.86
CDY21104	Canola	mitochondrion	80.26	45.86
CDY00010	Canola	extracellular	80.26	45.86
CDX86189	Canola	mitochondrion	80.26	45.86
CDX80683	Canola	mitochondrion	80.26	45.86
Bra040415.1-P	Field mustard	mitochondrion	80.26	45.86
Bra040115.1-P	Field mustard	mitochondrion	80.26	45.86
Bra036117.1-P	Field mustard	mitochondrion	80.26	45.86
Bra009989.1-P	Field mustard	mitochondrion	80.26	45.86
PGSC0003DMT400049836	Potato	mitochondrion	80.26	45.86
CDY52499	Canola	mitochondrion	78.95	45.11
CDY05587	Canola	mitochondrion	78.95	45.11
AT5G28060.1	Thale cress	mitochondrion	77.63	44.36
VIT_14s0030g01620.t01	Wine grape	mitochondrion	77.63	43.07
GSMUA_Achr6P05510_001	Banana	mitochondrion	76.32	42.03
GSMUA_Achr9P28760_001	Banana	mitochondrion	73.68	40.58
GSMUA_Achr2P15660_001	Banana	mitochondrion	73.68	40.58
Zm00001d016276_P002	Maize	cytosol, mitochondrion	71.05	39.42
GSMUA_AchrUn_...	Banana	mitochondrion	63.16	38.71
Zm00001d011741_P001	Maize	plastid	69.74	38.69
EES06539	Sorghum	mitochondrion, plastid	69.74	38.69
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	69.74	38.41
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	69.74	38.41
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	69.74	38.41
Os01t0723200-01	Rice	nucleus	69.74	38.41
Os02t0229000-01	Rice	nucleus	69.74	38.41
Zm00001d043606_P001	Maize	mitochondrion	68.42	37.96
EES03542	Sorghum	mitochondrion	68.42	37.96
EER88512	Sorghum	mitochondrion	67.11	37.23
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	65.79	36.5
Zm00001d036985_P001	Maize	mitochondrion, plastid	65.79	36.5
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	65.79	36.5
TraesCS6B01G234000.1	Wheat	golgi, unclear	65.79	36.5
HORVU2Hr1G055560.3	Barley	cytosol, mitochondrion	67.11	36.43
GSMUA_Achr4P30950_001	Banana	mitochondrion	59.21	36.29
TraesCS7A01G356300.1	Wheat	golgi, nucleus, unclear	64.47	35.77
Os06t0555400-01	Rice	cytosol, mitochondrion	53.95	35.65
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	67.11	35.42
HORVU3Hr1G068610.1	Barley	mitochondrion	63.16	35.04
Zm00001d039246_P001	Maize	mitochondrion	52.63	33.33
KRH64028	Soybean	mitochondrion	60.53	33.33
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	64.47	28.82
Zm00001d043381_P001	Maize	cytosol	34.21	28.57
HORVU6Hr1G044840.1	Barley	plasma membrane	65.79	28.09
GSMUA_Achr8P20160_001	Banana	mitochondrion	51.32	19.7

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	UniProt:A0A0R0FM88	EMBL:ACUP02010392	EnsemblPlantsGene:GLYMA_17G147100	GO:GO:0000462
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	EnsemblPlants:KRH04217
ProteinID:KRH04217	ProteinID:KRH04217.1	PFAM:PD006052	PFAM:PF01282	PANTHER:PTHR10496	PANTHER:PTHR10496:SF9
InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e	SUPFAM:SSF54189	UniParc:UPI0006EDAA39	:	:

Description

hypothetical protein

Coordinates

chr17:+:12129715..12133104

Molecular Weight (calculated)

8585.5 Da

IEP (calculated)

10.811

GRAVY (calculated)

-0.438

Length

76 amino acids

Sequence
(BLAST)

1: MADKAVTIRT RMFMTTRLLS GKQFVIDVLH PGSANDSKAE LKEKLRRMYD EKDTNPVFAF KFRTHFGGGK STGFGV

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.