CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036117.1-P	Field mustard	mitochondrion	100.0	100.0
CDY59816	Canola	mitochondrion	100.0	100.0
CDY50766	Canola	mitochondrion	100.0	100.0
CDY41909	Canola	mitochondrion	100.0	100.0
CDY30024	Canola	mitochondrion	100.0	100.0
CDY21104	Canola	mitochondrion	100.0	100.0
CDX86189	Canola	mitochondrion	100.0	100.0
CDX80683	Canola	mitochondrion	100.0	100.0
CDY05587	Canola	mitochondrion	99.25	99.25
CDY52499	Canola	mitochondrion	99.25	99.25
AT5G28060.1	Thale cress	mitochondrion	93.98	93.98
CDX74161	Canola	mitochondrion	66.92	91.75
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	90.98	90.98
PGSC0003DMT400049836	Potato	mitochondrion	90.23	90.23
PGSC0003DMT400051640	Potato	extracellular	90.23	90.23
Solyc01g097870.2.1	Tomato	mitochondrion	90.23	90.23
Solyc09g065330.2.1	Tomato	nucleus	90.23	90.23
KRG96941	Soybean	nucleus	89.47	86.86
KRH68706	Soybean	endoplasmic reticulum	87.97	85.4
Zm00001d016276_P002	Maize	cytosol, mitochondrion	87.22	84.67
KRH34063	Soybean	mitochondrion	87.22	84.67
VIT_14s0030g01620.t01	Wine grape	mitochondrion	86.47	83.94
Zm00001d011741_P001	Maize	plastid	86.47	83.94
Os06t0555400-01	Rice	cytosol, mitochondrion	72.18	83.48
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	85.71	83.21
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	85.71	83.21
VIT_07s0151g00900.t01	Wine grape	mitochondrion	85.71	83.21
EES06539	Sorghum	mitochondrion, plastid	85.71	83.21
GSMUA_AchrUn_...	Banana	mitochondrion	77.44	83.06
Zm00001d039246_P001	Maize	mitochondrion	74.44	82.5
TraesCS7A01G356300.1	Wheat	golgi, nucleus, unclear	84.96	82.48
Zm00001d043606_P001	Maize	mitochondrion	84.96	82.48
EES03542	Sorghum	mitochondrion	84.96	82.48
GSMUA_Achr6P05510_001	Banana	mitochondrion	84.96	81.88
GSMUA_Achr9P28760_001	Banana	mitochondrion	84.96	81.88
GSMUA_Achr2P15660_001	Banana	mitochondrion	84.21	81.16
EER88512	Sorghum	mitochondrion	83.46	81.02
Zm00001d036985_P001	Maize	mitochondrion, plastid	83.46	81.02
GSMUA_Achr4P30950_001	Banana	mitochondrion	75.19	80.65
KRG92744	Soybean	mitochondrion	83.46	80.43
TraesCS6B01G234000.1	Wheat	golgi, unclear	82.71	80.29
KRH04217	Soybean	mitochondrion	45.86	80.26
Os02t0229000-01	Rice	nucleus	82.71	79.71
Os01t0723200-01	Rice	nucleus	82.71	79.71
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	81.2	78.26
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	80.45	77.54
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	80.45	77.54
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	83.46	77.08
KRH04214	Soybean	cytosol	54.89	75.26
HORVU3Hr1G068610.1	Barley	mitochondrion	76.69	74.45
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	57.14	71.7
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	83.46	65.29
HORVU6Hr1G044840.1	Barley	plasma membrane	83.46	62.36
KRH64028	Soybean	mitochondrion	59.4	57.25
HORVU2Hr1G055560.3	Barley	cytosol, mitochondrion	57.89	55.0
Zm00001d043381_P001	Maize	cytosol	34.59	50.55
GSMUA_Achr8P20160_001	Banana	mitochondrion	60.15	40.4

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	GO:A0A078J2A2	UniProt:A0A078J2A2	EnsemblPlants:CDY00010	ProteinID:CDY00010
ProteinID:CDY00010.1	ProteinID:CDY21104.1	ProteinID:CDY30024.1	ProteinID:CDY41909.1	ProteinID:CDY50766.1	ProteinID:CDY59816.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00109485001	HAMAP:MF_00545	PFAM:PD006052
PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF5	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e
InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	UniParc:UPI0000E649F3	:	:	:

Description

BnaC09g02910D40S ribosomal protein S24 [Source:UniProtKB/TrEMBL;Acc:A0A078J2A2]

Coordinates

chrLK031916:-:214149..215473

Molecular Weight (calculated)

15412.1 Da

IEP (calculated)

11.418

GRAVY (calculated)

-0.861

Length

133 amino acids

Sequence
(BLAST)

001: MAEKAVTIRT RKFMTNRLLS RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFVF KFRTHFGGGK SSGFGLIYDN VESAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDP KKK

Best Arabidopsis Sequence Match ( AT3G04920.1 )
(BLAST)

001: MAEKAVTIRT RKFMTNRLLS RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFVF KFRTHFGGGK SSGFGLIYDT VESAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDA KKK

Arabidopsis Description

RPS24A40S ribosomal protein S24-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS17]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.