Factsheet for GSMUA_Achr4P30950_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	mitochondrion	94.35	94.35
GSMUA_Achr9P28760_001	Banana	mitochondrion	97.58	87.68
GSMUA_Achr2P15660_001	Banana	mitochondrion	96.77	86.96
GSMUA_Achr6P05510_001	Banana	mitochondrion	95.16	85.51
Os06t0555400-01	Rice	cytosol, mitochondrion	78.23	84.35
KRG96941	Soybean	nucleus	90.32	81.75
Zm00001d039246_P001	Maize	mitochondrion	78.23	80.83
VIT_14s0030g01620.t01	Wine grape	mitochondrion	88.71	80.29
KRH68706	Soybean	endoplasmic reticulum	88.71	80.29
PGSC0003DMT400051640	Potato	extracellular	85.48	79.7
Solyc09g065330.2.1	Tomato	nucleus	85.48	79.7
Solyc01g097870.2.1	Tomato	mitochondrion	85.48	79.7
PGSC0003DMT400049836	Potato	mitochondrion	85.48	79.7
VIT_07s0151g00900.t01	Wine grape	mitochondrion	87.9	79.56
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	84.68	78.95
KRH34063	Soybean	mitochondrion	87.1	78.83
KRH04214	Soybean	cytosol	60.48	77.32
AT3G04920.1	Thale cress	mitochondrion	82.26	76.69
AT5G28060.1	Thale cress	mitochondrion	81.45	75.94
CDY59816	Canola	mitochondrion	80.65	75.19
CDY52499	Canola	mitochondrion	80.65	75.19
CDY50766	Canola	mitochondrion	80.65	75.19
CDY41909	Canola	mitochondrion	80.65	75.19
CDY30024	Canola	mitochondrion	80.65	75.19
CDY21104	Canola	mitochondrion	80.65	75.19
CDY05587	Canola	mitochondrion	80.65	75.19
CDY00010	Canola	extracellular	80.65	75.19
CDX86189	Canola	mitochondrion	80.65	75.19
CDX80683	Canola	mitochondrion	80.65	75.19
Bra040115.1-P	Field mustard	mitochondrion	80.65	75.19
Bra036117.1-P	Field mustard	mitochondrion	80.65	75.19
Bra009989.1-P	Field mustard	mitochondrion	80.65	75.19
Zm00001d011741_P001	Maize	plastid	82.26	74.45
Zm00001d043606_P001	Maize	mitochondrion	82.26	74.45
EES03542	Sorghum	mitochondrion	82.26	74.45
Bra040415.1-P	Field mustard	mitochondrion	79.84	74.44
Os02t0229000-01	Rice	nucleus	82.26	73.91
EES06539	Sorghum	mitochondrion, plastid	81.45	73.72
Zm00001d016276_P002	Maize	cytosol, mitochondrion	81.45	73.72
Os01t0723200-01	Rice	nucleus	81.45	73.19
EER88512	Sorghum	mitochondrion	80.65	72.99
Zm00001d036985_P001	Maize	mitochondrion, plastid	79.03	71.53
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	78.23	70.8
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	78.23	70.8
TraesCS7A01G356300.1	Wheat	golgi, nucleus, unclear	78.23	70.8
TraesCS6B01G234000.1	Wheat	golgi, unclear	77.42	70.07
KRG92744	Soybean	mitochondrion	77.42	69.57
CDX74161	Canola	mitochondrion	54.03	69.07
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	76.61	68.84
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	76.61	68.84
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	75.81	68.12
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	78.23	67.36
HORVU3Hr1G068610.1	Barley	mitochondrion	72.58	65.69
KRH04217	Soybean	mitochondrion	36.29	59.21
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	50.0	58.49
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	76.61	55.88
HORVU6Hr1G044840.1	Barley	plasma membrane	76.61	53.37
KRH64028	Soybean	mitochondrion	53.23	47.83
Zm00001d043381_P001	Maize	cytosol	34.68	47.25
HORVU2Hr1G055560.3	Barley	cytosol, mitochondrion	51.61	45.71
GSMUA_Achr8P20160_001	Banana	mitochondrion	59.68	37.37

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr4G30950_001	EnsemblPlants:GSMUA_Achr4P30950_001	EnsemblPlants:GSMUA_Achr4T30950_001	UniProt:M0STK7	HAMAP:MF_00545	PFAM:PD006052
PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF5	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e
InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	UniParc:UPI000295A1D4	SEG:seg	:	:

Description

40S ribosomal protein S24-2 [Source:GMGC_GENE;Acc:GSMUA_Achr4G30950_001]

Coordinates

chr4:-:28325406..28328434

Molecular Weight (calculated)

14286.7 Da

IEP (calculated)

11.197

GRAVY (calculated)

-0.913

Length

124 amino acids

Sequence
(BLAST)

001: MTNRLLYRKQ FVIDVLHPGR ANVSKAELKE KLAKLYEVRD PDTIFVFKFR THFGGGKSTG FGLIYDTVEN AKKYEPKYRL IRNGLAKKVE KSRKQMKERK
101: NRAKKVRGVK KTKAGDAAKA GKKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.