Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 4
- nucleus 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
19621931
nucleus: 23777608 nucleus: 26035336 plasma membrane: 27800704 plastid: 27992503 |
msms PMID:
23777608
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
26035336
doi
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Os06t0555400-01 | Rice | cytosol, mitochondrion | 83.33 | 100.0 |
Os01t0723200-01 | Rice | nucleus | 94.2 | 94.2 |
TraesCS6B01G234000.1 | Wheat | golgi, unclear | 92.03 | 92.7 |
Zm00001d016276_P002 | Maize | cytosol, mitochondrion | 91.3 | 91.97 |
EES06539 | Sorghum | mitochondrion, plastid | 91.3 | 91.97 |
TraesCS6D01G177000.1 | Wheat | mitochondrion, plastid | 92.75 | 88.89 |
GSMUA_AchrUn_... | Banana | mitochondrion | 76.09 | 84.68 |
Solyc01g097870.2.1 | Tomato | mitochondrion | 80.43 | 83.46 |
Bra040115.1-P | Field mustard | mitochondrion | 79.71 | 82.71 |
Bra009989.1-P | Field mustard | mitochondrion | 79.71 | 82.71 |
PGSC0003DMT400049836 | Potato | mitochondrion | 79.71 | 82.71 |
PGSC0003DMT400051640 | Potato | extracellular | 79.71 | 82.71 |
Solyc06g084230.2.1 | Tomato | endoplasmic reticulum, unclear | 79.71 | 82.71 |
AT3G04920.1 | Thale cress | mitochondrion | 79.71 | 82.71 |
Solyc09g065330.2.1 | Tomato | nucleus | 79.71 | 82.71 |
Bra036117.1-P | Field mustard | mitochondrion | 79.71 | 82.71 |
Bra040415.1-P | Field mustard | mitochondrion | 79.71 | 82.71 |
CDY59816 | Canola | mitochondrion | 79.71 | 82.71 |
CDY52499 | Canola | mitochondrion | 79.71 | 82.71 |
CDY50766 | Canola | mitochondrion | 79.71 | 82.71 |
CDY41909 | Canola | mitochondrion | 79.71 | 82.71 |
CDY30024 | Canola | mitochondrion | 79.71 | 82.71 |
CDY21104 | Canola | mitochondrion | 79.71 | 82.71 |
CDY05587 | Canola | mitochondrion | 79.71 | 82.71 |
CDY00010 | Canola | extracellular | 79.71 | 82.71 |
CDX86189 | Canola | mitochondrion | 79.71 | 82.71 |
CDX80683 | Canola | mitochondrion | 79.71 | 82.71 |
GSMUA_Achr6P05510_001 | Banana | mitochondrion | 82.61 | 82.61 |
GSMUA_Achr4P30950_001 | Banana | mitochondrion | 73.91 | 82.26 |
GSMUA_Achr9P28760_001 | Banana | mitochondrion | 81.88 | 81.88 |
GSMUA_Achr2P15660_001 | Banana | mitochondrion | 81.88 | 81.88 |
KRG96941 | Soybean | nucleus | 80.43 | 81.02 |
KRH68706 | Soybean | endoplasmic reticulum | 79.71 | 80.29 |
KRH34063 | Soybean | mitochondrion | 78.99 | 79.56 |
VIT_07s0151g00900.t01 | Wine grape | mitochondrion | 78.26 | 78.83 |
VIT_14s0030g01620.t01 | Wine grape | mitochondrion | 78.26 | 78.83 |
AT5G28060.1 | Thale cress | mitochondrion | 75.36 | 78.2 |
CDX74161 | Canola | mitochondrion | 52.9 | 75.26 |
KRG92744 | Soybean | mitochondrion | 74.64 | 74.64 |
KRH04214 | Soybean | cytosol | 50.72 | 72.16 |
HORVU6Hr1G044840.1 | Barley | plasma membrane | 91.3 | 70.79 |
KRH04217 | Soybean | mitochondrion | 38.41 | 69.74 |
KRH64028 | Soybean | mitochondrion | 52.9 | 52.9 |
GSMUA_Achr8P20160_001 | Banana | mitochondrion | 58.7 | 40.91 |
Protein Annotations
MapMan:17.1.3.1.25 | Gene3D:3.30.70.3370 | EntrezGene:4324671 | EntrezGene:4328797 | EMBL:AK063794 | EMBL:AK122140 |
ProteinID:BAB84441.1 | ProteinID:BAB89495.1 | ProteinID:BAD25872.1 | ProteinID:BAD26158.1 | ProteinID:BAF06020.1 | ProteinID:BAF08272.1 |
ProteinID:BAF19765.1 | ProteinID:BAS74105.1 | ProteinID:BAS77760.1 | ProteinID:BAS98218.1 | ncoils:Coil | GO:GO:0000462 |
GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022627 | HAMAP:MF_00545 |
EnsemblPlantsGene:Os02g0229000 | EnsemblPlants:Os02t0229000-01 | PFAM:PD006052 | PFAM:PF01282 | ScanProsite:PS00529 | PANTHER:PTHR10496 |
PANTHER:PTHR10496:SF9 | UniProt:Q6H541 | InterPro:Ribosomal_L23/L15e_core_dom_sf | InterPro:Ribosomal_S24e | InterPro:Ribosomal_S24e_CS | SUPFAM:SSF54189 |
UniParc:UPI00003B457D | RefSeq:XP_015614819.1 | RefSeq:XP_015623021.1 | SEG:seg | : | : |
Description
Similar to 40S ribosomal protein S19-like. (Os02t0229000-01)
Coordinates
chr2:-:7258694..7260380
Molecular Weight (calculated)
15749.5 Da
IEP (calculated)
11.283
GRAVY (calculated)
-0.793
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MADTKTAPAV TLRTRKFMTN RLLSRKQFVL EVLHPGRANV SKADLKEKLA KLYEVKDSNC IFVFKFRTHF GGGKSTGFGL IYDNLDAAKK YEPKYRLIRN
101: GLATKVEKSR KQMKERKNRA KKIRGVKKTK AGDAGKKK
101: GLATKVEKSR KQMKERKNRA KKIRGVKKTK AGDAGKKK
001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK
Arabidopsis Description
RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.