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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 3
  • cytosol 2
  • mitochondrion 4
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:plastid
Predotar:plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:nucleus
YLoc:mitochondrion
nucleus: 19621931
nucleus: 23777608
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os06t0555400-01 Rice cytosol, mitochondrion 83.33 100.0
Os01t0723200-01 Rice nucleus 94.2 94.2
TraesCS6B01G234000.1 Wheat golgi, unclear 92.03 92.7
Zm00001d016276_P002 Maize cytosol, mitochondrion 91.3 91.97
EES06539 Sorghum mitochondrion, plastid 91.3 91.97
TraesCS6D01G177000.1 Wheat mitochondrion, plastid 92.75 88.89
GSMUA_AchrUn_... Banana mitochondrion 76.09 84.68
Solyc01g097870.2.1 Tomato mitochondrion 80.43 83.46
Bra040115.1-P Field mustard mitochondrion 79.71 82.71
Bra009989.1-P Field mustard mitochondrion 79.71 82.71
PGSC0003DMT400049836 Potato mitochondrion 79.71 82.71
PGSC0003DMT400051640 Potato extracellular 79.71 82.71
Solyc06g084230.2.1 Tomato endoplasmic reticulum, unclear 79.71 82.71
AT3G04920.1 Thale cress mitochondrion 79.71 82.71
Solyc09g065330.2.1 Tomato nucleus 79.71 82.71
Bra036117.1-P Field mustard mitochondrion 79.71 82.71
Bra040415.1-P Field mustard mitochondrion 79.71 82.71
CDY59816 Canola mitochondrion 79.71 82.71
CDY52499 Canola mitochondrion 79.71 82.71
CDY50766 Canola mitochondrion 79.71 82.71
CDY41909 Canola mitochondrion 79.71 82.71
CDY30024 Canola mitochondrion 79.71 82.71
CDY21104 Canola mitochondrion 79.71 82.71
CDY05587 Canola mitochondrion 79.71 82.71
CDY00010 Canola extracellular 79.71 82.71
CDX86189 Canola mitochondrion 79.71 82.71
CDX80683 Canola mitochondrion 79.71 82.71
GSMUA_Achr6P05510_001 Banana mitochondrion 82.61 82.61
GSMUA_Achr4P30950_001 Banana mitochondrion 73.91 82.26
GSMUA_Achr9P28760_001 Banana mitochondrion 81.88 81.88
GSMUA_Achr2P15660_001 Banana mitochondrion 81.88 81.88
KRG96941 Soybean nucleus 80.43 81.02
KRH68706 Soybean endoplasmic reticulum 79.71 80.29
KRH34063 Soybean mitochondrion 78.99 79.56
VIT_07s0151g00900.t01 Wine grape mitochondrion 78.26 78.83
VIT_14s0030g01620.t01 Wine grape mitochondrion 78.26 78.83
AT5G28060.1 Thale cress mitochondrion 75.36 78.2
CDX74161 Canola mitochondrion 52.9 75.26
KRG92744 Soybean mitochondrion 74.64 74.64
KRH04214 Soybean cytosol 50.72 72.16
HORVU6Hr1G044840.1 Barley plasma membrane 91.3 70.79
KRH04217 Soybean mitochondrion 38.41 69.74
KRH64028 Soybean mitochondrion 52.9 52.9
GSMUA_Achr8P20160_001 Banana mitochondrion 58.7 40.91
Protein Annotations
MapMan:17.1.3.1.25Gene3D:3.30.70.3370EntrezGene:4324671EntrezGene:4328797EMBL:AK063794EMBL:AK122140
ProteinID:BAB84441.1ProteinID:BAB89495.1ProteinID:BAD25872.1ProteinID:BAD26158.1ProteinID:BAF06020.1ProteinID:BAF08272.1
ProteinID:BAF19765.1ProteinID:BAS74105.1ProteinID:BAS77760.1ProteinID:BAS98218.1ncoils:CoilGO:GO:0000462
GO:GO:0003674GO:GO:0003735GO:GO:0005198GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006139GO:GO:0006412GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0019538GO:GO:0022627HAMAP:MF_00545
EnsemblPlantsGene:Os02g0229000EnsemblPlants:Os02t0229000-01PFAM:PD006052PFAM:PF01282ScanProsite:PS00529PANTHER:PTHR10496
PANTHER:PTHR10496:SF9UniProt:Q6H541InterPro:Ribosomal_L23/L15e_core_dom_sfInterPro:Ribosomal_S24eInterPro:Ribosomal_S24e_CSSUPFAM:SSF54189
UniParc:UPI00003B457DRefSeq:XP_015614819.1RefSeq:XP_015623021.1SEG:seg::
Description
Similar to 40S ribosomal protein S19-like. (Os02t0229000-01)
Coordinates
chr2:-:7258694..7260380
Molecular Weight (calculated)
15749.5 Da
IEP (calculated)
11.283
GRAVY (calculated)
-0.793
Length
138 amino acids
Sequence
(BLAST)
001: MADTKTAPAV TLRTRKFMTN RLLSRKQFVL EVLHPGRANV SKADLKEKLA KLYEVKDSNC IFVFKFRTHF GGGKSTGFGL IYDNLDAAKK YEPKYRLIRN
101: GLATKVEKSR KQMKERKNRA KKIRGVKKTK AGDAGKKK
Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)
001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK
Arabidopsis Description
RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.