Factsheet for VIT_14s0030g01620.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0151g00900.t01	Wine grape	mitochondrion	96.35	96.35
Solyc09g065330.2.1	Tomato	nucleus	90.51	93.23
PGSC0003DMT400051640	Potato	extracellular	90.51	93.23
PGSC0003DMT400049836	Potato	mitochondrion	90.51	93.23
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	89.78	92.48
KRG96941	Soybean	nucleus	91.97	91.97
GSMUA_AchrUn_...	Banana	mitochondrion	83.21	91.94
KRH68706	Soybean	endoplasmic reticulum	90.51	90.51
KRH34063	Soybean	mitochondrion	90.51	90.51
GSMUA_Achr9P28760_001	Banana	mitochondrion	89.78	89.13
GSMUA_Achr6P05510_001	Banana	mitochondrion	89.78	89.13
GSMUA_Achr4P30950_001	Banana	mitochondrion	80.29	88.71
GSMUA_Achr2P15660_001	Banana	mitochondrion	89.05	88.41
AT3G04920.1	Thale cress	mitochondrion	84.67	87.22
CDY00010	Canola	extracellular	83.94	86.47
Bra009989.1-P	Field mustard	mitochondrion	83.94	86.47
Bra036117.1-P	Field mustard	mitochondrion	83.94	86.47
Bra040115.1-P	Field mustard	mitochondrion	83.94	86.47
CDX80683	Canola	mitochondrion	83.94	86.47
CDY59816	Canola	mitochondrion	83.94	86.47
CDY50766	Canola	mitochondrion	83.94	86.47
CDY41909	Canola	mitochondrion	83.94	86.47
CDY30024	Canola	mitochondrion	83.94	86.47
CDY21104	Canola	mitochondrion	83.94	86.47
CDX86189	Canola	mitochondrion	83.94	86.47
CDY52499	Canola	mitochondrion	83.21	85.71
Bra040415.1-P	Field mustard	mitochondrion	83.21	85.71
CDY05587	Canola	mitochondrion	83.21	85.71
AT5G28060.1	Thale cress	mitochondrion	82.48	84.96
KRG92744	Soybean	mitochondrion	83.21	82.61
CDX74161	Canola	mitochondrion	58.39	82.47
Os06t0555400-01	Rice	cytosol, mitochondrion	68.61	81.74
Zm00001d039246_P001	Maize	mitochondrion	70.8	80.83
Zm00001d016276_P002	Maize	cytosol, mitochondrion	80.29	80.29
Os01t0723200-01	Rice	nucleus	80.29	79.71
Zm00001d011741_P001	Maize	plastid	79.56	79.56
Zm00001d036985_P001	Maize	mitochondrion, plastid	78.83	78.83
Zm00001d043606_P001	Maize	mitochondrion	78.83	78.83
EES03542	Sorghum	mitochondrion	78.83	78.83
EES06539	Sorghum	mitochondrion, plastid	78.83	78.83
Os02t0229000-01	Rice	nucleus	78.83	78.26
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	78.83	78.26
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	78.83	78.26
KRH04217	Soybean	mitochondrion	43.07	77.63
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	78.1	77.54
EER88512	Sorghum	mitochondrion	77.37	77.37
KRH04214	Soybean	cytosol	54.74	77.32
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	76.64	76.64
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	76.64	76.64
TraesCS6B01G234000.1	Wheat	golgi, unclear	75.91	75.91
TraesCS7A01G356300.1	Wheat	golgi, nucleus, unclear	75.91	75.91
HORVU3Hr1G068610.1	Barley	mitochondrion	74.45	74.45
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	76.64	72.92
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	51.09	66.04
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	76.64	61.76
KRH64028	Soybean	mitochondrion	61.31	60.87
HORVU6Hr1G044840.1	Barley	plasma membrane	75.18	57.87
HORVU2Hr1G055560.3	Barley	cytosol, mitochondrion	51.82	50.71
Zm00001d043381_P001	Maize	cytosol	29.93	45.05
GSMUA_Achr8P20160_001	Banana	mitochondrion	59.12	40.91

Protein Annotations

EntrezGene:100243420	wikigene:100243420	MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	UniProt:A5BH65	EMBL:AM459438
ProteinID:CAN72332	ProteinID:CAN72332.1	ProteinID:CCB58104	ProteinID:CCB58104.1	EMBL:FN596249	GO:GO:0000462
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529
EntrezGene:LOC100243420	wikigene:LOC100243420	HAMAP:MF_00545	PFAM:PD006052	PFAM:PF01282	ScanProsite:PS00529
PANTHER:PTHR10496	PANTHER:PTHR10496:SF5	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e	InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189
TIGR:TC52406	TIGR:TC55239	UniParc:UPI0001520D5B	ArrayExpress:VIT_14s0030g01620	EnsemblPlantsGene:VIT_14s0030g01620	EnsemblPlants:VIT_14s0030g01620.t01
unigene:Vvi.1310	RefSeq:XP_002276521	RefSeq:XP_002276521.1	RefSeq:XP_003633657	RefSeq:XP_003633657.1	SEG:seg

Description

40S ribosomal protein S24 [Source:UniProtKB/TrEMBL;Acc:A5BH65]

Coordinates

chr14:-:6402979..6406918

Molecular Weight (calculated)

15708.4 Da

IEP (calculated)

11.283

GRAVY (calculated)

-0.902

Length

137 amino acids

Sequence
(BLAST)

001: MADKAVTIRT RKFMTNRLLS RKQFIIDVLH PGRPNVSKAE LKDKLASMYE VKDPNSIFVF KFRTHFGGGK STGFGLIYDS VENAKKYEPK YRLIRNGLDT
101: KVEKSRKQMK ERKNRSKKVR GVKKTKAGDA AKAGKKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.