Factsheet for Zm00001d036985_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

mitochondrion 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039246_P001	Maize	mitochondrion	85.4	97.5
EER88512	Sorghum	mitochondrion	95.62	95.62
Zm00001d043606_P001	Maize	mitochondrion	94.16	94.16
Zm00001d011741_P001	Maize	plastid	93.43	93.43
Zm00001d016276_P002	Maize	cytosol, mitochondrion	92.7	92.7
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	91.97	91.97
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	91.97	91.97
TraesCS7A01G356300.1	Wheat	golgi, nucleus, unclear	91.24	91.24
CDY50766	Canola	mitochondrion	81.02	83.46
AT3G04920.1	Thale cress	mitochondrion	81.02	83.46
CDY59816	Canola	mitochondrion	81.02	83.46
CDY41909	Canola	mitochondrion	81.02	83.46
CDY21104	Canola	mitochondrion	81.02	83.46
Bra009989.1-P	Field mustard	mitochondrion	81.02	83.46
Bra036117.1-P	Field mustard	mitochondrion	81.02	83.46
Bra040115.1-P	Field mustard	mitochondrion	81.02	83.46
Bra040415.1-P	Field mustard	mitochondrion	81.02	83.46
CDX80683	Canola	mitochondrion	81.02	83.46
CDX86189	Canola	mitochondrion	81.02	83.46
CDY00010	Canola	extracellular	81.02	83.46
CDY30024	Canola	mitochondrion	81.02	83.46
CDY05587	Canola	mitochondrion	80.29	82.71
CDY52499	Canola	mitochondrion	80.29	82.71
Solyc09g065330.2.1	Tomato	nucleus	79.56	81.95
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	79.56	81.95
Solyc01g097870.2.1	Tomato	mitochondrion	79.56	81.95
PGSC0003DMT400051640	Potato	extracellular	79.56	81.95
PGSC0003DMT400049836	Potato	mitochondrion	79.56	81.95
GSMUA_AchrUn_...	Banana	mitochondrion	72.99	80.65
KRG96941	Soybean	nucleus	79.56	79.56
GSMUA_Achr4P30950_001	Banana	mitochondrion	71.53	79.03
GSMUA_Achr6P05510_001	Banana	mitochondrion	79.56	78.99
GSMUA_Achr9P28760_001	Banana	mitochondrion	79.56	78.99
AT5G28060.1	Thale cress	mitochondrion	76.64	78.95
KRH68706	Soybean	endoplasmic reticulum	78.83	78.83
VIT_14s0030g01620.t01	Wine grape	mitochondrion	78.83	78.83
VIT_07s0151g00900.t01	Wine grape	mitochondrion	78.83	78.83
GSMUA_Achr2P15660_001	Banana	mitochondrion	78.83	78.26
KRH34063	Soybean	mitochondrion	77.37	77.37
CDX74161	Canola	mitochondrion	53.28	75.26
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	91.24	73.53
KRG92744	Soybean	mitochondrion	72.99	72.46
KRH04214	Soybean	cytosol	48.18	68.04
KRH04217	Soybean	mitochondrion	36.5	65.79
Zm00001d043381_P001	Maize	cytosol	36.5	54.95
KRH64028	Soybean	mitochondrion	52.55	52.17
GSMUA_Achr8P20160_001	Banana	mitochondrion	56.93	39.39

Protein Annotations

EntrezGene:103629822	MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	UniProt:A0A1D6LT19	ProteinID:AQK82573.1	ncoils:Coil
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	HAMAP:MF_00545	PFAM:PD006052	PFAM:PF01282
ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF5	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e	InterPro:Ribosomal_S24e_CS
SUPFAM:SSF54189	UniParc:UPI000174042F	EnsemblPlantsGene:Zm00001d036985	EnsemblPlants:Zm00001d036985_P001	EnsemblPlants:Zm00001d036985_T001	SEG:seg

Description

40S ribosomal protein S24

Coordinates

chr6:-:108317523..108319096

Molecular Weight (calculated)

15675.5 Da

IEP (calculated)

11.418

GRAVY (calculated)

-0.751

Length

137 amino acids

Sequence
(BLAST)

001: MADSKAAAAV TLRTRKFMTN RLLSRKQFVL EVIHPGRPNV SKAELKERLA KIYEVKDPNC IFVFKFRTNF GGGKSTGFGL IYDNLEAAKK FEPKYRLIRN
101: GLATKVEKSR KQMKERKNRA KKIRGVKKTK AGDAKKK

Best Arabidopsis Sequence Match ( AT3G04920.1 )
(BLAST)

001: MAEKAVTIRT RKFMTNRLLS RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFVF KFRTHFGGGK SSGFGLIYDT VESAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDA KKK

Arabidopsis Description

RPS24A40S ribosomal protein S24-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS17]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.