Factsheet for Zm00001d011741_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043606_P001	Maize	mitochondrion	98.54	98.54
EES03542	Sorghum	mitochondrion	98.54	98.54
Zm00001d016276_P002	Maize	cytosol, mitochondrion	93.43	93.43
Zm00001d036985_P001	Maize	mitochondrion, plastid	93.43	93.43
Zm00001d039246_P001	Maize	mitochondrion	80.29	91.67
Os01t0723200-01	Rice	nucleus	90.51	89.86
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	87.59	86.96
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	87.59	86.96
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	87.59	86.96
AT3G04920.1	Thale cress	mitochondrion	83.94	86.47
CDY59816	Canola	mitochondrion	83.94	86.47
CDY50766	Canola	mitochondrion	83.94	86.47
CDY41909	Canola	mitochondrion	83.94	86.47
CDY21104	Canola	mitochondrion	83.94	86.47
Bra009989.1-P	Field mustard	mitochondrion	83.94	86.47
Bra036117.1-P	Field mustard	mitochondrion	83.94	86.47
Bra040115.1-P	Field mustard	mitochondrion	83.94	86.47
Bra040415.1-P	Field mustard	mitochondrion	83.94	86.47
CDX80683	Canola	mitochondrion	83.94	86.47
CDX86189	Canola	mitochondrion	83.94	86.47
CDY00010	Canola	extracellular	83.94	86.47
CDY30024	Canola	mitochondrion	83.94	86.47
CDY05587	Canola	mitochondrion	83.21	85.71
CDY52499	Canola	mitochondrion	83.21	85.71
Solyc09g065330.2.1	Tomato	nucleus	83.21	85.71
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	83.21	85.71
Solyc01g097870.2.1	Tomato	mitochondrion	83.21	85.71
PGSC0003DMT400051640	Potato	extracellular	83.21	85.71
PGSC0003DMT400049836	Potato	mitochondrion	83.21	85.71
GSMUA_AchrUn_...	Banana	mitochondrion	75.18	83.06
AT5G28060.1	Thale cress	mitochondrion	80.29	82.71
KRG96941	Soybean	nucleus	82.48	82.48
GSMUA_Achr4P30950_001	Banana	mitochondrion	74.45	82.26
GSMUA_Achr6P05510_001	Banana	mitochondrion	82.48	81.88
KRH68706	Soybean	endoplasmic reticulum	81.75	81.75
GSMUA_Achr2P15660_001	Banana	mitochondrion	81.75	81.16
GSMUA_Achr9P28760_001	Banana	mitochondrion	81.75	81.16
HORVU3Hr1G068610.1	Barley	mitochondrion	81.02	81.02
KRH34063	Soybean	mitochondrion	80.29	80.29
VIT_14s0030g01620.t01	Wine grape	mitochondrion	79.56	79.56
VIT_07s0151g00900.t01	Wine grape	mitochondrion	79.56	79.56
CDX74161	Canola	mitochondrion	56.2	79.38
KRG92744	Soybean	mitochondrion	75.91	75.36
KRH04214	Soybean	cytosol	50.37	71.13
KRH04217	Soybean	mitochondrion	38.69	69.74
Zm00001d043381_P001	Maize	cytosol	40.15	60.44
KRH64028	Soybean	mitochondrion	53.28	52.9
GSMUA_Achr8P20160_001	Banana	mitochondrion	56.2	38.89

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	EntrezGene:542641	ProteinID:AQK97885.1	ProteinID:AQK97886.1	UniProt:B4FJ27
EMBL:BT037115	ncoils:Coil	EMBL:EU952514	EMBL:EU976265	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0030529	HAMAP:MF_00545	PFAM:PD006052	PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496
PANTHER:PTHR10496:SF5	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e	InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	UniParc:UPI00017B72A6
EnsemblPlantsGene:Zm00001d011741	EnsemblPlants:Zm00001d011741_P001	EnsemblPlants:Zm00001d011741_T001	SEG:seg	:	:

Description

40S ribosomal protein S24

Coordinates

chr8:-:160442324..160444345

Molecular Weight (calculated)

15734.5 Da

IEP (calculated)

11.509

GRAVY (calculated)

-0.804

Length

137 amino acids

Sequence
(BLAST)

001: MADSKATSAV TLRTRKFMTN RLLARKQFVL EVIHPGRANV SKAELKERLA KMYEVKDPNT IFVFKFRTHF GGGKSTGFGL IYDNLESAKK FEPKYRLIRN
101: GLATKVEKSR KQMKERKNRA KKIRGVKKTK AGDAKKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.