Factsheet for AT3G04920.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040115.1-P	Field mustard	mitochondrion	98.5	98.5
CDY21104	Canola	mitochondrion	98.5	98.5
CDY30024	Canola	mitochondrion	98.5	98.5
CDY41909	Canola	mitochondrion	98.5	98.5
CDY50766	Canola	mitochondrion	98.5	98.5
Bra040415.1-P	Field mustard	mitochondrion	97.74	97.74
AT5G28060.1	Thale cress	mitochondrion	94.74	94.74
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	91.73	91.73
Solyc09g065330.2.1	Tomato	nucleus	90.98	90.98
Solyc01g097870.2.1	Tomato	mitochondrion	90.98	90.98
PGSC0003DMT400051640	Potato	extracellular	90.98	90.98
PGSC0003DMT400049836	Potato	mitochondrion	90.98	90.98
CDX74161	Canola	mitochondrion	66.17	90.72
KRG96941	Soybean	nucleus	90.98	88.32
KRH68706	Soybean	endoplasmic reticulum	89.47	86.86
KRH34063	Soybean	mitochondrion	87.97	85.4
Zm00001d016276_P002	Maize	cytosol, mitochondrion	87.22	84.67
VIT_14s0030g01620.t01	Wine grape	mitochondrion	87.22	84.67
Zm00001d011741_P001	Maize	plastid	86.47	83.94
VIT_07s0151g00900.t01	Wine grape	mitochondrion	86.47	83.94
GSMUA_AchrUn_...	Banana	mitochondrion	78.2	83.87
Os06t0555400-01	Rice	cytosol, mitochondrion	72.18	83.48
GSMUA_Achr9P28760_001	Banana	mitochondrion	86.47	83.33
GSMUA_Achr6P05510_001	Banana	mitochondrion	86.47	83.33
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	85.71	83.21
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	85.71	83.21
EES06539	Sorghum	mitochondrion, plastid	85.71	83.21
GSMUA_Achr2P15660_001	Banana	mitochondrion	85.71	82.61
Zm00001d039246_P001	Maize	mitochondrion	74.44	82.5
Zm00001d043606_P001	Maize	mitochondrion	84.96	82.48
TraesCS7A01G356300.1	Wheat	golgi, nucleus, unclear	84.96	82.48
EES03542	Sorghum	mitochondrion	84.96	82.48
GSMUA_Achr4P30950_001	Banana	mitochondrion	76.69	82.26
EER88512	Sorghum	mitochondrion	83.46	81.02
Zm00001d036985_P001	Maize	mitochondrion, plastid	83.46	81.02
KRG92744	Soybean	mitochondrion	83.46	80.43
TraesCS6B01G234000.1	Wheat	golgi, unclear	82.71	80.29
KRH04217	Soybean	mitochondrion	45.86	80.26
Os02t0229000-01	Rice	nucleus	82.71	79.71
Os01t0723200-01	Rice	nucleus	82.71	79.71
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	81.2	78.26
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	80.45	77.54
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	80.45	77.54
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	83.46	77.08
KRH04214	Soybean	cytosol	55.64	76.29
HORVU3Hr1G068610.1	Barley	mitochondrion	76.69	74.45
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	56.39	70.75
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	83.46	65.29
HORVU6Hr1G044840.1	Barley	plasma membrane	83.46	62.36
KRH64028	Soybean	mitochondrion	59.4	57.25
HORVU2Hr1G055560.3	Barley	cytosol, mitochondrion	57.14	54.29
Zm00001d043381_P001	Maize	cytosol	33.83	49.45
GSMUA_Achr8P20160_001	Banana	mitochondrion	60.9	40.91

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	EntrezGene:819652	UniProt:A0A178VB55	ProteinID:AAG51413.1	ProteinID:AEE74158.1
ArrayExpress:AT3G04920	EnsemblPlantsGene:AT3G04920	RefSeq:AT3G04920	TAIR:AT3G04920	RefSeq:AT3G04920-TAIR-G	EnsemblPlants:AT3G04920.1
TAIR:AT3G04920.1	EMBL:AY050364	EMBL:AY062671	EMBL:AY086479	EMBL:AY093332	EMBL:AY094044
GO:GO:0000462	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005829	GO:GO:0005840
GO:GO:0005886	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0022626
GO:GO:0022627	GO:GO:0030529	GO:GO:0042788	HAMAP:MF_00545	RefSeq:NP_187143.1	ProteinID:OAP03409.1
PFAM:PD006052	PFAM:PF01282	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0005052	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	ScanProsite:PS00529
PANTHER:PTHR10496	PANTHER:PTHR10496:SF5	UniProt:Q9SS17	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e	InterPro:Ribosomal_S24e_CS
SUPFAM:SSF54189	UniParc:UPI0000000BBB	SEG:seg	:	:	:

Description

RPS24A40S ribosomal protein S24-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS17]

Coordinates

chr3:+:1360837..1362449

Molecular Weight (calculated)

15373.1 Da

IEP (calculated)

11.418

GRAVY (calculated)

-0.814

Length

133 amino acids

Sequence
(BLAST)

001: MAEKAVTIRT RKFMTNRLLS RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFVF KFRTHFGGGK SSGFGLIYDT VESAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDA KKK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.