Factsheet for GSMUA_AchrUn_randomP03510_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P30950_001	Banana	mitochondrion	94.35	94.35
GSMUA_Achr2P15660_001	Banana	mitochondrion	97.58	87.68
GSMUA_Achr9P28760_001	Banana	mitochondrion	96.77	86.96
GSMUA_Achr6P05510_001	Banana	mitochondrion	96.77	86.96
Os06t0555400-01	Rice	cytosol, mitochondrion	79.84	86.09
KRG96941	Soybean	nucleus	91.94	83.21
VIT_14s0030g01620.t01	Wine grape	mitochondrion	91.94	83.21
Solyc01g097870.2.1	Tomato	mitochondrion	88.71	82.71
KRH34063	Soybean	mitochondrion	91.13	82.48
VIT_07s0151g00900.t01	Wine grape	mitochondrion	91.13	82.48
PGSC0003DMT400049836	Potato	mitochondrion	87.9	81.95
PGSC0003DMT400051640	Potato	extracellular	87.9	81.95
Solyc09g065330.2.1	Tomato	nucleus	87.9	81.95
KRH68706	Soybean	endoplasmic reticulum	90.32	81.75
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	87.1	81.2
Zm00001d039246_P001	Maize	mitochondrion	78.23	80.83
KRH04214	Soybean	cytosol	62.1	79.38
AT3G04920.1	Thale cress	mitochondrion	83.87	78.2
CDY59816	Canola	mitochondrion	83.06	77.44
CDY52499	Canola	mitochondrion	83.06	77.44
Bra009989.1-P	Field mustard	mitochondrion	83.06	77.44
CDY50766	Canola	mitochondrion	83.06	77.44
CDY41909	Canola	mitochondrion	83.06	77.44
CDY30024	Canola	mitochondrion	83.06	77.44
CDY21104	Canola	mitochondrion	83.06	77.44
CDY05587	Canola	mitochondrion	83.06	77.44
CDY00010	Canola	extracellular	83.06	77.44
CDX86189	Canola	mitochondrion	83.06	77.44
CDX80683	Canola	mitochondrion	83.06	77.44
Bra040115.1-P	Field mustard	mitochondrion	83.06	77.44
Bra036117.1-P	Field mustard	mitochondrion	83.06	77.44
AT5G28060.1	Thale cress	mitochondrion	82.26	76.69
Bra040415.1-P	Field mustard	mitochondrion	82.26	76.69
Os02t0229000-01	Rice	nucleus	84.68	76.09
Os01t0723200-01	Rice	nucleus	83.87	75.36
Zm00001d011741_P001	Maize	plastid	83.06	75.18
Zm00001d016276_P002	Maize	cytosol, mitochondrion	83.06	75.18
Zm00001d043606_P001	Maize	mitochondrion	83.06	75.18
EES03542	Sorghum	mitochondrion	83.06	75.18
EER88512	Sorghum	mitochondrion	82.26	74.45
EES06539	Sorghum	mitochondrion, plastid	82.26	74.45
KRG92744	Soybean	mitochondrion	81.45	73.19
Zm00001d036985_P001	Maize	mitochondrion, plastid	80.65	72.99
TraesCS6B01G234000.1	Wheat	golgi, unclear	79.84	72.26
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	79.03	71.53
TraesCS7A01G356300.1	Wheat	golgi, nucleus, unclear	79.03	71.53
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	79.03	71.53
CDX74161	Canola	mitochondrion	55.65	71.13
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	79.03	71.01
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	79.03	71.01
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	78.23	70.29
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	80.65	69.44
HORVU3Hr1G068610.1	Barley	mitochondrion	74.19	67.15
KRH04217	Soybean	mitochondrion	38.71	63.16
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	50.0	58.49
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	77.42	56.47
HORVU6Hr1G044840.1	Barley	plasma membrane	79.03	55.06
KRH64028	Soybean	mitochondrion	56.45	50.72
Zm00001d043381_P001	Maize	cytosol	34.68	47.25
HORVU2Hr1G055560.3	Barley	cytosol, mitochondrion	51.61	45.71
GSMUA_Achr8P20160_001	Banana	mitochondrion	61.29	38.38

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSMUA_AchrUn_randomG03510_001	EnsemblPlants:GSMUA_AchrUn_randomP03510_001	EnsemblPlants:GSMUA_AchrUn_randomT03510_001	UniProt:M0U613	HAMAP:MF_00545	PFAM:PD006052
PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF5	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e
InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	UniParc:UPI000294AD4F	SEG:seg	:	:

Description

40S ribosomal protein S24-2 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG03510_001]

Coordinates

chrchrUn_random:+:17119748..17124435

Molecular Weight (calculated)

14170.5 Da

IEP (calculated)

11.310

GRAVY (calculated)

-0.837

Length

124 amino acids

Sequence
(BLAST)

001: MTNRLLSRKQ FVIDVLHPGR ANVSKAELKE KLANLYEVRD LNTIFVFKFR THFGGGKSTG FGLIYDSVEN AKKYEPKYRL IRNGLATKVE KSRKQMKERK
101: NRAKKVRGVK KTKAGDAAKA GKKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.