Factsheet for Os06t0555400-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0229000-01	Rice	nucleus	100.0	83.33
Os01t0723200-01	Rice	nucleus	96.52	80.43
GSMUA_AchrUn_...	Banana	mitochondrion	86.09	79.84
GSMUA_Achr4P30950_001	Banana	mitochondrion	84.35	78.23
EES06539	Sorghum	mitochondrion, plastid	92.17	77.37
Zm00001d016276_P002	Maize	cytosol, mitochondrion	91.3	76.64
TraesCS6B01G234000.1	Wheat	golgi, unclear	91.3	76.64
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	92.17	73.61
Solyc01g097870.2.1	Tomato	mitochondrion	84.35	72.93
GSMUA_Achr6P05510_001	Banana	mitochondrion	86.96	72.46
CDX86189	Canola	mitochondrion	83.48	72.18
Bra009989.1-P	Field mustard	mitochondrion	83.48	72.18
PGSC0003DMT400049836	Potato	mitochondrion	83.48	72.18
PGSC0003DMT400051640	Potato	extracellular	83.48	72.18
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	83.48	72.18
Bra036117.1-P	Field mustard	mitochondrion	83.48	72.18
AT3G04920.1	Thale cress	mitochondrion	83.48	72.18
Solyc09g065330.2.1	Tomato	nucleus	83.48	72.18
Bra040115.1-P	Field mustard	mitochondrion	83.48	72.18
Bra040415.1-P	Field mustard	mitochondrion	83.48	72.18
CDY59816	Canola	mitochondrion	83.48	72.18
CDY52499	Canola	mitochondrion	83.48	72.18
CDY50766	Canola	mitochondrion	83.48	72.18
CDY41909	Canola	mitochondrion	83.48	72.18
CDY30024	Canola	mitochondrion	83.48	72.18
CDY21104	Canola	mitochondrion	83.48	72.18
CDY05587	Canola	mitochondrion	83.48	72.18
CDY00010	Canola	extracellular	83.48	72.18
CDX80683	Canola	mitochondrion	83.48	72.18
KRH04214	Soybean	cytosol	60.87	72.16
GSMUA_Achr9P28760_001	Banana	mitochondrion	86.09	71.74
GSMUA_Achr2P15660_001	Banana	mitochondrion	86.09	71.74
KRG96941	Soybean	nucleus	84.35	70.8
KRH68706	Soybean	endoplasmic reticulum	83.48	70.07
KRH34063	Soybean	mitochondrion	82.61	69.34
VIT_07s0151g00900.t01	Wine grape	mitochondrion	81.74	68.61
VIT_14s0030g01620.t01	Wine grape	mitochondrion	81.74	68.61
AT5G28060.1	Thale cress	mitochondrion	79.13	68.42
KRG92744	Soybean	mitochondrion	77.39	64.49
CDX74161	Canola	mitochondrion	53.04	62.89
HORVU6Hr1G044840.1	Barley	plasma membrane	90.43	58.43
KRH04217	Soybean	mitochondrion	35.65	53.95
KRH64028	Soybean	mitochondrion	53.04	44.2
GSMUA_Achr8P20160_001	Banana	mitochondrion	57.39	33.33

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	ProteinID:BAF19765.1	ProteinID:BAS98218.1	ncoils:Coil	GO:GO:0000462
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	EnsemblPlantsGene:Os06g0555400
EnsemblPlants:Os06t0555400-01	PFAM:PD006052	PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF9
UniProt:Q0DBK8	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e	InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	UniParc:UPI0000E12850
SEG:seg	:	:	:	:	:

Description

Similar to 40S ribosomal protein S19-like. (Os06t0555400-01)

Coordinates

chr6:+:21163415..21167131

Molecular Weight (calculated)

13131.2 Da

IEP (calculated)

11.103

GRAVY (calculated)

-0.902

Length

115 amino acids

Sequence
(BLAST)

001: SRKQFVLEVL HPGRANVSKA DLKEKLAKLY EVKDSNCIFV FKFRTHFGGG KSTGFGLIYD NLDAAKKYEP KYRLIRNGLA TKVEKSRKQM KERKNRAKKI
101: RGVKKTKAGD AGKKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.