Factsheet for Solyc09g065330.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049836	Potato	mitochondrion	100.0	100.0
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	99.25	99.25
Solyc01g097870.2.1	Tomato	mitochondrion	98.5	98.5
AT3G04920.1	Thale cress	mitochondrion	90.98	90.98
VIT_14s0030g01620.t01	Wine grape	mitochondrion	93.23	90.51
AT5G28060.1	Thale cress	mitochondrion	90.23	90.23
CDY59816	Canola	mitochondrion	90.23	90.23
CDY50766	Canola	mitochondrion	90.23	90.23
CDY41909	Canola	mitochondrion	90.23	90.23
CDY30024	Canola	mitochondrion	90.23	90.23
CDY21104	Canola	mitochondrion	90.23	90.23
CDY00010	Canola	extracellular	90.23	90.23
Bra009989.1-P	Field mustard	mitochondrion	90.23	90.23
Bra036117.1-P	Field mustard	mitochondrion	90.23	90.23
Bra040115.1-P	Field mustard	mitochondrion	90.23	90.23
CDX86189	Canola	mitochondrion	90.23	90.23
CDX80683	Canola	mitochondrion	90.23	90.23
Bra040415.1-P	Field mustard	mitochondrion	89.47	89.47
CDY05587	Canola	mitochondrion	89.47	89.47
CDY52499	Canola	mitochondrion	89.47	89.47
KRG96941	Soybean	nucleus	91.73	89.05
VIT_07s0151g00900.t01	Wine grape	mitochondrion	91.73	89.05
KRH34063	Soybean	mitochondrion	90.98	88.32
GSMUA_AchrUn_...	Banana	mitochondrion	81.95	87.9
KRH68706	Soybean	endoplasmic reticulum	90.23	87.59
GSMUA_Achr9P28760_001	Banana	mitochondrion	88.72	85.51
GSMUA_Achr6P05510_001	Banana	mitochondrion	88.72	85.51
GSMUA_Achr4P30950_001	Banana	mitochondrion	79.7	85.48
GSMUA_Achr2P15660_001	Banana	mitochondrion	87.97	84.78
KRG92744	Soybean	mitochondrion	87.97	84.78
CDX74161	Canola	mitochondrion	61.65	84.54
Os06t0555400-01	Rice	cytosol, mitochondrion	72.18	83.48
Zm00001d011741_P001	Maize	plastid	85.71	83.21
Zm00001d043606_P001	Maize	mitochondrion	84.96	82.48
Zm00001d016276_P002	Maize	cytosol, mitochondrion	84.96	82.48
EES03542	Sorghum	mitochondrion	84.96	82.48
EES06539	Sorghum	mitochondrion, plastid	84.96	82.48
Zm00001d039246_P001	Maize	mitochondrion	73.68	81.67
EER88512	Sorghum	mitochondrion	83.46	81.02
KRH04217	Soybean	mitochondrion	45.86	80.26
Os01t0723200-01	Rice	nucleus	82.71	79.71
Os02t0229000-01	Rice	nucleus	82.71	79.71
Zm00001d036985_P001	Maize	mitochondrion, plastid	81.95	79.56
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	81.95	79.56
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	81.95	79.56
TraesCS7A01G356300.1	Wheat	golgi, nucleus, unclear	81.2	78.83
TraesCS6B01G234000.1	Wheat	golgi, unclear	79.7	77.37
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	78.95	76.09
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	78.95	76.09
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	78.2	75.36
KRH04214	Soybean	cytosol	54.89	75.26
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	80.45	74.31
HORVU3Hr1G068610.1	Barley	mitochondrion	74.44	72.26
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	55.64	69.81
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	81.95	64.12
KRH64028	Soybean	mitochondrion	63.91	61.59
HORVU6Hr1G044840.1	Barley	plasma membrane	78.95	58.99
HORVU2Hr1G055560.3	Barley	cytosol, mitochondrion	56.39	53.57
Zm00001d043381_P001	Maize	cytosol	32.33	47.25
GSMUA_Achr8P20160_001	Banana	mitochondrion	59.4	39.9

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	GO:GO:0000462	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	UniProt:K4CUG0	HAMAP:MF_00545	PFAM:PD006052
PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF5	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e
InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	EnsemblPlantsGene:Solyc09g065330.2	EnsemblPlants:Solyc09g065330.2.1	UniParc:UPI000276C523	SEG:seg

Description

40S ribosomal protein S24 [Source:UniProtKB/TrEMBL;Acc:K4CUG0]

Coordinates

chr9:+:63396567..63399163

Molecular Weight (calculated)

15406.1 Da

IEP (calculated)

11.338

GRAVY (calculated)

-0.887

Length

133 amino acids

Sequence
(BLAST)

001: MADKAVTIRT RKFMTNRLLA RKQFIIDVLH PGRANVSKAE LKEKLSRMYE VKDPNAIFVF KFRTHFGGGK STGFGLIYDS VENAKKYEPK YRLIRNGLDT
101: KVEKSRKQMK ERKNRAKKVR GVKKTKAGDA KKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.