Factsheet for HORVU6Hr1G044840.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	mitochondrion

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G234000.1	Wheat	golgi, unclear	76.4	99.27
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	75.84	93.75
Os02t0229000-01	Rice	nucleus	70.79	91.3
Zm00001d016276_P002	Maize	cytosol, mitochondrion	69.66	90.51
EES06539	Sorghum	mitochondrion, plastid	69.66	90.51
Os06t0555400-01	Rice	cytosol, mitochondrion	58.43	90.43
AT3G04920.1	Thale cress	mitochondrion	62.36	83.46
CDY59816	Canola	mitochondrion	62.36	83.46
CDY52499	Canola	mitochondrion	62.36	83.46
CDY50766	Canola	mitochondrion	62.36	83.46
CDY41909	Canola	mitochondrion	62.36	83.46
CDY30024	Canola	mitochondrion	62.36	83.46
CDY21104	Canola	mitochondrion	62.36	83.46
CDY05587	Canola	mitochondrion	62.36	83.46
CDY00010	Canola	extracellular	62.36	83.46
CDX86189	Canola	mitochondrion	62.36	83.46
CDX80683	Canola	mitochondrion	62.36	83.46
Bra040415.1-P	Field mustard	mitochondrion	62.36	83.46
Bra040115.1-P	Field mustard	mitochondrion	62.36	83.46
Bra036117.1-P	Field mustard	mitochondrion	62.36	83.46
Bra009989.1-P	Field mustard	mitochondrion	62.36	83.46
HORVU3Hr1G068610.1	Barley	mitochondrion	62.36	81.02
Solyc01g097870.2.1	Tomato	mitochondrion	59.55	79.7
GSMUA_AchrUn_...	Banana	mitochondrion	55.06	79.03
Solyc09g065330.2.1	Tomato	nucleus	58.99	78.95
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	58.99	78.95
AT5G28060.1	Thale cress	mitochondrion	58.99	78.95
PGSC0003DMT400051640	Potato	extracellular	58.99	78.95
PGSC0003DMT400049836	Potato	mitochondrion	58.99	78.95
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	46.63	78.3
GSMUA_Achr6P05510_001	Banana	mitochondrion	60.11	77.54
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	73.6	77.06
GSMUA_Achr9P28760_001	Banana	mitochondrion	59.55	76.81
GSMUA_Achr2P15660_001	Banana	mitochondrion	59.55	76.81
KRG96941	Soybean	nucleus	58.99	76.64
GSMUA_Achr4P30950_001	Banana	mitochondrion	53.37	76.61
KRH68706	Soybean	endoplasmic reticulum	58.43	75.91
VIT_14s0030g01620.t01	Wine grape	mitochondrion	57.87	75.18
KRH34063	Soybean	mitochondrion	57.87	75.18
VIT_07s0151g00900.t01	Wine grape	mitochondrion	57.3	74.45
CDX74161	Canola	mitochondrion	40.45	74.23
KRG92744	Soybean	mitochondrion	54.49	70.29
KRH04214	Soybean	cytosol	36.52	67.01
KRH04217	Soybean	mitochondrion	28.09	65.79
HORVU2Hr1G055560.3	Barley	cytosol, mitochondrion	48.31	61.43
KRH64028	Soybean	mitochondrion	39.89	51.45
GSMUA_Achr8P20160_001	Banana	mitochondrion	42.13	37.88

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	UniProt:A0A287U2E9	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU6Hr1G044840
EnsemblPlants:HORVU6Hr1G044840.1	HAMAP:MF_00545	PFAM:PD006052	PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496
PANTHER:PTHR10496:SF9	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e	InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	UniParc:UPI000B479BB7
SEG:seg	:	:	:	:	:

Description

40S ribosomal protein S24 [Source:UniProtKB/TrEMBL;Acc:A0A287U2E9]

Coordinates

chrchr6H:-:258696168..258828973

Molecular Weight (calculated)

20128.8 Da

IEP (calculated)

11.336

GRAVY (calculated)

-0.632

Length

178 amino acids

Sequence
(BLAST)

001: LYIKPHFPRH TLAVPPPPLT RAPAVARNSC EEEAPRASAA VMADAKTAPA VTLRTRKFMT NRLLSRKQFV LEVIHPGRAN VSKADLKERL AKIYEVKDSN
101: CIFVFKFRTH FGGGKSTGFG LIYDNLEAAK KFEPKYRLIR NGLATKIEKS RKQIKERKNR TKKIRGVKKT KAGDAKKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.