CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016276_P002	Maize	cytosol, mitochondrion	95.62	95.62
EER88512	Sorghum	mitochondrion	92.7	92.7
Os06t0555400-01	Rice	cytosol, mitochondrion	77.37	92.17
EES03542	Sorghum	mitochondrion	91.97	91.97
Os02t0229000-01	Rice	nucleus	91.97	91.3
TraesCS6B01G234000.1	Wheat	golgi, unclear	91.24	91.24
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	90.51	86.11
CDY50766	Canola	mitochondrion	83.21	85.71
CDY59816	Canola	mitochondrion	83.21	85.71
CDY52499	Canola	mitochondrion	83.21	85.71
CDY41909	Canola	mitochondrion	83.21	85.71
CDY30024	Canola	mitochondrion	83.21	85.71
Bra036117.1-P	Field mustard	mitochondrion	83.21	85.71
AT3G04920.1	Thale cress	mitochondrion	83.21	85.71
Bra009989.1-P	Field mustard	mitochondrion	83.21	85.71
CDY21104	Canola	mitochondrion	83.21	85.71
Bra040115.1-P	Field mustard	mitochondrion	83.21	85.71
Bra040415.1-P	Field mustard	mitochondrion	83.21	85.71
CDX80683	Canola	mitochondrion	83.21	85.71
CDX86189	Canola	mitochondrion	83.21	85.71
CDY00010	Canola	extracellular	83.21	85.71
CDY05587	Canola	mitochondrion	83.21	85.71
Solyc09g065330.2.1	Tomato	nucleus	82.48	84.96
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	82.48	84.96
Solyc01g097870.2.1	Tomato	mitochondrion	82.48	84.96
PGSC0003DMT400051640	Potato	extracellular	82.48	84.96
PGSC0003DMT400049836	Potato	mitochondrion	82.48	84.96
GSMUA_AchrUn_...	Banana	mitochondrion	74.45	82.26
AT5G28060.1	Thale cress	mitochondrion	79.56	81.95
GSMUA_Achr4P30950_001	Banana	mitochondrion	73.72	81.45
KRG96941	Soybean	nucleus	81.02	81.02
GSMUA_Achr9P28760_001	Banana	mitochondrion	81.02	80.43
GSMUA_Achr6P05510_001	Banana	mitochondrion	81.02	80.43
KRH68706	Soybean	endoplasmic reticulum	80.29	80.29
GSMUA_Achr2P15660_001	Banana	mitochondrion	80.29	79.71
KRH34063	Soybean	mitochondrion	78.83	78.83
VIT_07s0151g00900.t01	Wine grape	mitochondrion	78.83	78.83
VIT_14s0030g01620.t01	Wine grape	mitochondrion	78.83	78.83
CDX74161	Canola	mitochondrion	55.47	78.35
KRG92744	Soybean	mitochondrion	74.45	73.91
KRH04214	Soybean	cytosol	51.09	72.16
KRH04217	Soybean	mitochondrion	38.69	69.74
HORVU6Hr1G044840.1	Barley	plasma membrane	90.51	69.66
KRH64028	Soybean	mitochondrion	52.55	52.17
GSMUA_Achr8P20160_001	Banana	mitochondrion	56.93	39.39

Protein Annotations

MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	EntrezGene:8085549	UniProt:C5XYI5	ncoils:Coil	EnsemblPlants:EES06539
ProteinID:EES06539	ProteinID:EES06539.1	GO:GO:0000462	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	HAMAP:MF_00545	PFAM:PD006052	PFAM:PF01282
ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF5	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_S24e	InterPro:Ribosomal_S24e_CS
EnsemblPlantsGene:SORBI_3004G099500	SUPFAM:SSF54189	unigene:Sbi.4722	UniParc:UPI0001A85DB1	RefSeq:XP_002453563.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:8876425..8878170

Molecular Weight (calculated)

15728.6 Da

IEP (calculated)

11.357

GRAVY (calculated)

-0.718

Length

137 amino acids

Sequence
(BLAST)

001: MADAKVLPAV TLRTRKFMTN RLLARKQFVL EVLHPGRANV SKAELKEKLA KMYEVKDPNC IFVFKFRTHF GGGKSTGFGL IYDNLDSAKK FEPKYRLIRN
101: GLATKVEKSR KQMKERKNRA KKIRGVKKTK AGDAKKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.