Factsheet for VIT_07s0151g00900.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0030g01620.t01	Wine grape	mitochondrion	96.35	96.35
PGSC0003DMT400049836	Potato	mitochondrion	89.05	91.73
Solyc09g065330.2.1	Tomato	nucleus	89.05	91.73
PGSC0003DMT400051640	Potato	extracellular	89.05	91.73
GSMUA_AchrUn_...	Banana	mitochondrion	82.48	91.13
Solyc06g084230.2.1	Tomato	endoplasmic reticulum, unclear	88.32	90.98
GSMUA_Achr4P30950_001	Banana	mitochondrion	79.56	87.9
GSMUA_Achr6P05510_001	Banana	mitochondrion	88.32	87.68
GSMUA_Achr9P28760_001	Banana	mitochondrion	88.32	87.68
GSMUA_Achr2P15660_001	Banana	mitochondrion	87.59	86.96
AT3G04920.1	Thale cress	mitochondrion	83.94	86.47
CDY50766	Canola	mitochondrion	83.21	85.71
Bra036117.1-P	Field mustard	mitochondrion	83.21	85.71
CDY59816	Canola	mitochondrion	83.21	85.71
Bra009989.1-P	Field mustard	mitochondrion	83.21	85.71
CDY41909	Canola	mitochondrion	83.21	85.71
CDY30024	Canola	mitochondrion	83.21	85.71
CDY21104	Canola	mitochondrion	83.21	85.71
CDY00010	Canola	extracellular	83.21	85.71
CDX86189	Canola	mitochondrion	83.21	85.71
CDX80683	Canola	mitochondrion	83.21	85.71
Bra040115.1-P	Field mustard	mitochondrion	83.21	85.71
CDY52499	Canola	mitochondrion	82.48	84.96
Bra040415.1-P	Field mustard	mitochondrion	82.48	84.96
CDY05587	Canola	mitochondrion	82.48	84.96
AT5G28060.1	Thale cress	mitochondrion	81.02	83.46
Os06t0555400-01	Rice	cytosol, mitochondrion	68.61	81.74
Zm00001d039246_P001	Maize	mitochondrion	70.8	80.83
CDX74161	Canola	mitochondrion	56.93	80.41
Zm00001d016276_P002	Maize	cytosol, mitochondrion	80.29	80.29
Os01t0723200-01	Rice	nucleus	80.29	79.71
Zm00001d011741_P001	Maize	plastid	79.56	79.56
Zm00001d036985_P001	Maize	mitochondrion, plastid	78.83	78.83
Zm00001d043606_P001	Maize	mitochondrion	78.83	78.83
EES03542	Sorghum	mitochondrion	78.83	78.83
EES06539	Sorghum	mitochondrion, plastid	78.83	78.83
Os02t0229000-01	Rice	nucleus	78.83	78.26
TraesCS3A01G286000.1	Wheat	cytosol, mitochondrion	78.1	77.54
TraesCS3B01G320300.1	Wheat	cytosol, mitochondrion	78.1	77.54
EER88512	Sorghum	mitochondrion	77.37	77.37
TraesCS3D01G285800.1	Wheat	cytosol, mitochondrion	77.37	76.81
TraesCS7D01G366400.1	Wheat	cytosol, mitochondrion	75.91	75.91
TraesCS7B01G271400.1	Wheat	cytosol, mitochondrion	75.91	75.91
TraesCS7A01G356300.1	Wheat	golgi, nucleus, unclear	75.18	75.18
TraesCS6B01G234000.1	Wheat	golgi, unclear	75.18	75.18
HORVU3Hr1G068610.1	Barley	mitochondrion	73.72	73.72
TraesCS6D01G177000.1	Wheat	mitochondrion, plastid	75.91	72.22
HORVU1Hr1G044880.1	Barley	mitochondrion, plastid	50.37	65.09
HORVU7Hr1G088580.1	Barley	mitochondrion, plastid	75.91	61.18
HORVU6Hr1G044840.1	Barley	plasma membrane	74.45	57.3
HORVU2Hr1G055560.3	Barley	cytosol, mitochondrion	51.09	50.0
Zm00001d043381_P001	Maize	cytosol	29.2	43.96
GSMUA_Achr8P20160_001	Banana	mitochondrion	58.39	40.4

Protein Annotations

EntrezGene:100853567	wikigene:100853567	MapMan:17.1.3.1.25	Gene3D:3.30.70.3370	ProteinID:CBI28705	ProteinID:CBI28705.3
UniProt:D7TDY2	EMBL:FN595764	GO:GO:0000462	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	EntrezGene:LOC100853567	wikigene:LOC100853567	HAMAP:MF_00545
PFAM:PD006052	PFAM:PF01282	ScanProsite:PS00529	PANTHER:PTHR10496	PANTHER:PTHR10496:SF5	InterPro:Ribosomal_L23/L15e_core_dom_sf
InterPro:Ribosomal_S24e	InterPro:Ribosomal_S24e_CS	SUPFAM:SSF54189	TIGR:TC57057	UniParc:UPI00015CA452	ArrayExpress:VIT_07s0151g00900
EnsemblPlantsGene:VIT_07s0151g00900	EnsemblPlants:VIT_07s0151g00900.t01	unigene:Vvi.2466	RefSeq:XP_003632334	RefSeq:XP_003632334.1	RefSeq:XP_010651973.1
RefSeq:XP_010651974.1	RefSeq:XP_010651975.1	SEG:seg	:	:	:

Description

40S ribosomal protein S24 [Source:UniProtKB/TrEMBL;Acc:D7TDY2]

Coordinates

chr7:-:1117129..1119992

Molecular Weight (calculated)

15704.4 Da

IEP (calculated)

11.338

GRAVY (calculated)

-0.869

Length

137 amino acids

Sequence
(BLAST)

001: MADRAVTIRT RKFMTNRLLS RKQFIIDVLH PGRPNVAKAE LKDKLAGMYE VKDPNSIFVF KFRTHFGGGK STGFGLIYDS VENAKKYEPK YRLIRNGLDT
101: KVEKSRKQMK ERKNRAKKVR GVKKTKASDA AKAGKKK

Best Arabidopsis Sequence Match ( AT5G28060.1 )
(BLAST)

001: MAEKAVTIRT RNFMTNRLLA RKQFVIDVLH PGRANVSKAE LKEKLARMYE VKDPNAIFCF KFRTHFGGGK SSGYGLIYDT VENAKKFEPK YRLIRNGLDT
101: KIEKSRKQIK ERKNRAKKIR GVKKTKAGDT KKK

Arabidopsis Description

RPS24B40S ribosomal protein S24-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC83]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.