Factsheet for Bra024989.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000090.1-P
Bra000808.1-P
Bra001009.1-P
Bra002880.1-P
Bra003015.1-P
Bra003231.1-P
Bra003633.1-P
Bra005745.1-P
Bra006372.1-P
Bra006623.1-P
Bra007224.1-P
Bra008279.1-P
Bra008385.1-P
Bra009303.1-P
Bra009557.1-P
Bra010045.1-P
Bra010500.1-P
Bra010982.1-P
Bra011119.1-P
Bra011320.1-P
Bra011325.1-P
Bra011624.1-P
Bra012490.1-P
Bra012620.1-P
Bra013774.1-P
Bra014333.1-P
Bra014705.1-P
Bra015145.1-P
Bra015345.1-P
Bra017103.1-P
Bra017723.1-P
Bra020187.1-P
Bra021101.1-P
Bra022177.1-P
Bra022351.1-P
Bra022697.1-P
Bra023964.1-P
Bra024215.1-P
Bra024481.1-P
Bra024770.1-P
Bra024985.1-P
Bra024986.1-P
Bra025661.1-P
Bra026026.1-P
Bra026074.1-P
Bra026272.1-P
Bra026727.1-P
Bra027257.1-P
Bra027986.1-P
Bra028856.1-P
Bra029296.1-P
Bra029529.1-P
Bra029592.1-P
Bra029785.1-P
Bra030509.1-P
Bra030588.1-P
Bra030816.1-P
Bra032493.1-P
Bra032586.1-P
Bra032828.1-P
Bra033346.1-P
Bra034085.1-P
Bra034692.1-P
Bra034693.1-P
Bra035074.1-P
Bra035298.1-P
Bra035582.1-P
Bra036285.1-P
Bra037242.1-P
Bra037566.1-P
Bra039130.1-P
Bra039911.1-P
Bra040067.1-P
Bra040115.1-P
Bra040280.1-P
Bra040415.1-P
Bra040785.1-P
Bra040987.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G46860.1	Bra022177.1-P	AT1G02780.1	24556609
AT5G46860.1	Bra030509.1-P	AT1G02780.1	24556609
AT5G46860.1	Bra032586.1-P	AT1G02780.1	24556609
AT5G46860.1	Bra033346.1-P	AT1G02780.1	24556609
AT5G46860.1	Bra036285.1-P	AT1G02780.1	24556609
AT5G46860.1	Bra015345.1-P	AT1G04750.1	24556575
AT5G46860.1	Bra030588.1-P	AT1G04750.1	24556575
AT5G46860.1	Bra032493.1-P	AT1G04750.1	24556575
AT5G46860.1	Bra015345.1-P	AT1G04750.1	24556609
AT5G46860.1	Bra030588.1-P	AT1G04750.1	24556609
AT5G46860.1	Bra032493.1-P	AT1G04750.1	24556609
AT5G46860.1	Bra026074.1-P	AT1G16240.1	24556609
AT5G46860.1	Bra026727.1-P	AT1G16240.1	24556609
AT5G46860.1	Bra026026.1-P	AT1G16790.1	24556609
AT5G46860.1	Bra010982.1-P	AT1G25260.1	24556609
AT5G46860.1	Bra012490.1-P	AT1G25260.1	24556609
AT5G46860.1	Bra024770.1-P	AT1G25260.1	24556609
AT5G46860.1	Bra032828.1-P	AT1G27400.1	24556609
AT5G46860.1	Bra022351.1-P	AT1G36240.1	24556609
AT5G46860.1	Bra037566.1-P	AT1G36240.1	24556609
AT5G46860.1	Bra024985.1-P	AT1G43170.1	24556609
AT5G46860.1	Bra024986.1-P	AT1G43170.1	24556609
AT5G46860.1	Bra027986.1-P	AT1G43170.1	24556609
AT5G46860.1	Bra035298.1-P	AT1G43170.1	24556609
AT5G46860.1	Bra030816.1-P	AT1G56110.1	24556609
AT5G46860.1	Bra040785.1-P	AT1G56110.1	24556609
AT5G46860.1	Bra008279.1-P	AT1G76810.1	24556609
AT5G46860.1	Bra003633.1-P	AT1G78900.1	24556609
AT5G46860.1	Bra008385.1-P	AT1G78900.1	24556609
AT5G46860.1	Bra035074.1-P	AT1G78900.1	24556609
AT5G46860.1	Bra015145.1-P	AT2G04280.1	24556609
AT5G46860.1	Bra024481.1-P	AT2G18020.1	24556609
AT5G46860.1	Bra037242.1-P	AT2G18020.1	24556609
AT5G46860.1	Bra039911.1-P	AT2G18020.1	24556609
AT5G46860.1	Bra000090.1-P	AT2G38750.1	24556609
AT5G46860.1	Bra017103.1-P	AT2G38750.1	24556609
AT5G46860.1	Bra001009.1-P	AT3G01290.1	24556609
AT5G46860.1	Bra039130.1-P	AT3G01290.1	24556609
AT5G46860.1	Bra040115.1-P	AT3G04920.1	24556609
AT5G46860.1	Bra040415.1-P	AT3G04920.1	24556609
AT5G46860.1	Bra029592.1-P	AT3G06610.1	24556609
AT5G46860.1	Bra040280.1-P	AT3G06610.1	24556609
AT5G46860.1	Bra014333.1-P	AT3G09740.1	24556609
AT5G46860.1	Bra029785.1-P	AT3G09740.1	24556609
AT5G46860.1	Bra034085.1-P	AT3G09740.1	24556609
AT5G46860.1	Bra034692.1-P	AT3G13300.1	24556609
AT5G46860.1	Bra034693.1-P	AT3G13300.1	24556609
AT5G46860.1	Bra021101.1-P	AT3G15356.1	24556609
AT5G46860.1	Bra027257.1-P	AT3G15356.1	24556609
AT5G46860.1	Bra003231.1-P	AT3G56190.1	24556609
AT5G46860.1	Bra007224.1-P	AT3G56190.1	24556609
AT5G46860.1	Bra014705.1-P	AT3G56190.1	24556609
AT5G46860.1	Bra000808.1-P	AT4G04910.1	24556609
AT5G46860.1	Bra029529.1-P	AT4G04910.1	24556609
AT5G46860.1	Bra012620.1-P	AT4G18060.1	24556609
AT5G46860.1	Bra010500.1-P	AT4G24190.1	24556609
AT5G46860.1	Bra013774.1-P	AT4G24190.1	24556609
AT5G46860.1	Bra024215.1-P	AT4G28250.1	24556609
AT5G46860.1	Bra026272.1-P	AT4G28250.1	24556609
AT5G46860.1	Bra011119.1-P	AT4G29520.1	24556609
AT5G46860.1	Bra011320.1-P	AT4G32070.1	24556609
AT5G46860.1	Bra023964.1-P	AT4G32070.1	24556609
AT5G46860.1	Bra011325.1-P	AT4G32150.1	24556575
AT5G46860.1	Bra040067.1-P	AT4G32150.1	24556575
AT5G46860.1	Bra011325.1-P	AT4G32150.1	24556609
AT5G46860.1	Bra040067.1-P	AT4G32150.1	24556609
AT5G46860.1	Bra011624.1-P	AT4G35570.1	24556609
AT5G46860.1	Bra017723.1-P	AT4G35570.1	24556609
AT5G46860.1	Bra005745.1-P	AT5G02960.1	24556609
AT5G46860.1	Bra009557.1-P	AT5G02960.1	24556609
AT5G46860.1	Bra028856.1-P	AT5G02960.1	24556609
AT5G46860.1	Bra009303.1-P	AT5G06970.1	24556609
AT5G46860.1	Bra006372.1-P	AT5G16830.1	24556609
AT5G46860.1	Bra006623.1-P	AT5G22360.1	24556609
AT5G46860.1	Bra020187.1-P	AT5G22360.1	24556609
AT5G46860.1	Bra025661.1-P	AT5G39510.1	12815100
AT5G46860.1	Bra040987.1-P	AT5G39510.1	12815100
AT5G46860.1	Bra025661.1-P	AT5G39510.1	24556609
AT5G46860.1	Bra040987.1-P	AT5G39510.1	24556609
AT5G46860.1	Bra003015.1-P	AT5G54110.1	24556609
AT5G46860.1	Bra022697.1-P	AT5G54110.1	24556609
AT5G46860.1	Bra002880.1-P	AT5G55660.1	24556609
AT5G46860.1	Bra035582.1-P	AT5G55660.1	24556609
AT5G46860.1	Bra010045.1-P	AT5G61970.1	24556609
AT5G46860.1	Bra029296.1-P	AT5G61970.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33485	Canola	cytosol	100.0	100.0
CDX77702	Canola	cytosol	99.63	99.26
Bra022073.1-P	Field mustard	cytosol	93.7	94.76
AT5G46860.1	Thale cress	cytosol	90.37	91.04
Bra040178.1-P	Field mustard	cytosol	81.11	79.35
KRH07229	Soybean	endoplasmic reticulum	79.63	78.75
VIT_02s0012g01850.t01	Wine grape	cytosol	79.63	78.47
Solyc08g076540.2.1	Tomato	nucleus	79.26	78.39
PGSC0003DMT400043211	Potato	cytosol	78.52	77.66
PGSC0003DMT400038357	Potato	cytosol	78.52	77.66
KRH74378	Soybean	cytosol	78.52	77.66
KRH39570	Soybean	cytosol	78.52	77.66
KRH07476	Soybean	cytosol	78.52	77.66
Solyc06g062360.2.1	Tomato	cytosol	77.78	76.92
Solyc11g066910.1.1	Tomato	plastid	77.04	76.19
Solyc08g005200.2.1	Tomato	cytosol	75.93	75.09
PGSC0003DMT400084469	Potato	cytosol, golgi, mitochondrion, nucleus	17.41	74.6
Bra023256.1-P	Field mustard	cytosol	72.59	74.52
Bra012645.1-P	Field mustard	cytosol	76.67	74.46
TraesCS3A01G175000.1	Wheat	cytosol	73.33	71.48
GSMUA_Achr7P04850_001	Banana	cytosol	72.22	71.43
TraesCS3D01G180500.1	Wheat	cytosol	72.96	71.12
Os01t0254900-01	Rice	plasma membrane	73.7	71.07
HORVU3Hr1G035380.1	Barley	cytosol	71.85	70.04
EES02705	Sorghum	cytosol	71.48	68.93
GSMUA_Achr5P04090_001	Banana	cytosol	71.11	68.82
GSMUA_Achr4P20770_001	Banana	cytosol	69.26	68.5
GSMUA_Achr1P15580_001	Banana	cytosol	67.41	66.67
PGSC0003DMT400068230	Potato	cytosol	72.22	64.36
Bra006372.1-P	Field mustard	cytosol, plastid	64.44	63.04
Bra008592.1-P	Field mustard	cytosol, plastid	64.07	62.01
Zm00001d040286_P003	Maize	cytosol	62.22	56.19
Os02t0702800-01	Rice	cytosol	54.81	55.43
HORVU6Hr1G041590.1	Barley	cytosol	53.7	54.51
PGSC0003DMT400045973	Potato	cytosol	27.04	54.48
HORVU6Hr1G068640.1	Barley	cytosol	53.33	54.14
EES05663	Sorghum	cytosol	51.48	51.87
Zm00001d017756_P001	Maize	extracellular	47.41	51.61
TraesCS6D01G244100.2	Wheat	cytosol	52.96	48.97
TraesCS6A01G271000.1	Wheat	cytosol	48.52	48.7
TraesCS6B01G298100.3	Wheat	cytosol	48.52	47.29
Zm00001d008333_P003	Maize	cytosol	53.7	44.62
Zm00001d039536_P001	Maize	cytosol	40.0	41.06

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.2	EnsemblPlantsGene:Bra024989	EnsemblPlants:Bra024989.1	EnsemblPlants:Bra024989.1-P
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:IPR000727	UniProt:M4E883
PFAM:PF05739	PFAM:PF14523	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF138
SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000253FB0C	SEG:seg	:	:

Description

AT5G46860 (E=7e-116) VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | VAM3; SNAP receptor

Coordinates

chrA06:+:24553690..24554978

Molecular Weight (calculated)

29352.0 Da

IEP (calculated)

6.807

GRAVY (calculated)

-0.341

Length

270 amino acids

Sequence
(BLAST)

001: MSFQDLEAGK GRSRKINGGG GGRQDSTQAV ASGIFQINTG VSTFQRLVNT LGTPKDTPEL REKLHKTRLH IGQLVKDTSA KLKEASETDH RSGVNPSKKI
101: ADAKLAKDFQ AVLKEFQKAQ QTAAERETAY APLVPPSAHP SSYTASEADK IPEQRAQVME SKRQELVLLD NEIAFNEAVI EEREQGIQEI HTQIGEVNEI
201: FKDLAVLVND QGVMIDDIGT HIDNSRAATA QGKSQLAQAS KTQRSNSSLT CLLLVIFGIV LLIVIIVLAA

Best Arabidopsis Sequence Match ( AT5G46860.1 )
(BLAST)

001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA

Arabidopsis Description

SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.