Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036933.1-P | Field mustard | cytosol | 12.56 | 98.7 |
| CDY00241 | Canola | cytosol | 96.2 | 96.68 |
| CDX86945 | Canola | cytosol | 96.03 | 96.51 |
| Bra029296.1-P | Field mustard | cytosol | 89.92 | 90.22 |
| AT5G61970.1 | Thale cress | cytosol | 88.26 | 88.26 |
| PGSC0003DMT400040071 | Potato | cytosol | 61.32 | 74.95 |
| VIT_17s0000g00300.t01 | Wine grape | cytosol | 72.89 | 74.12 |
| Solyc03g093970.2.1 | Tomato | cytosol, plastid | 73.55 | 73.92 |
| Solyc02g062810.2.1 | Tomato | nucleus | 73.06 | 73.42 |
| KRH59740 | Soybean | cytosol, endoplasmic reticulum | 70.08 | 70.32 |
| Solyc02g062840.1.1 | Tomato | extracellular | 9.92 | 61.86 |
| KRH41061 | Soybean | cytosol | 67.6 | 59.36 |
| Solyc02g062830.1.1 | Tomato | plasma membrane | 12.56 | 51.01 |
| Solyc04g048930.1.1 | Tomato | nucleus | 6.28 | 46.91 |
Protein Annotations
| Gene3D:1.10.3450.40 | MapMan:23.3.1.1.6 | EnsemblPlantsGene:Bra010045 | EnsemblPlants:Bra010045.1 | EnsemblPlants:Bra010045.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005047 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005786 | GO:GO:0006614 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0008312 | GO:GO:0030529 | GO:GO:0030942 | InterPro:IPR038253 | UniProt:M4D0P6 |
| PFAM:PF16969 | PIRSF:PIRSF038995 | PANTHER:PTHR12860 | InterPro:SRP68 | InterPro:SRP68-RBD | InterPro:SRP68_N_sf |
| UniParc:UPI000253EED7 | SEG:seg | : | : | : | : |
Description
AT5G61970 (E=2e-296) | signal recognition particle-related / SRP-related
Coordinates
chrA06:+:18837429..18841301
Molecular Weight (calculated)
69202.7 Da
IEP (calculated)
8.847
GRAVY (calculated)
-0.617
Length
605 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKENEMSA MEIDDPKSDG SEQILPRFSM NVLQLMKTSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMT
101: ERAWSHAMDK RQLPDGPNAR QRIYLIGRLR KAVKWASLFS SLCSNKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETALAC FRNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIEYCKHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFNWL GYRFPVSNPK SRVSILKAQD FEKELQGPGA
301: EFLPAEKKLT IYDKLFTAYH DARTIIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKIAK SKLNRKRDDK TEKVTKPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKSEEIA FEEECQRKSL AFRAERCFYL AKSYSLAGKR VEAYALYCRA RSLTEDALSK FQSIANKDEG TIQELKELSK ECRANSCIEH
501: ATGIMEEEKA PEKLSKKIST ISLNDTTTKV EKYLVDKLEE YESAVGDGNT KMAPKIERFP PGFETIPRNP IVLDLAYNCI EFPVLEERKK TERKGFISRL
601: WGGRN
101: ERAWSHAMDK RQLPDGPNAR QRIYLIGRLR KAVKWASLFS SLCSNKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETALAC FRNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIEYCKHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFNWL GYRFPVSNPK SRVSILKAQD FEKELQGPGA
301: EFLPAEKKLT IYDKLFTAYH DARTIIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKIAK SKLNRKRDDK TEKVTKPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKSEEIA FEEECQRKSL AFRAERCFYL AKSYSLAGKR VEAYALYCRA RSLTEDALSK FQSIANKDEG TIQELKELSK ECRANSCIEH
501: ATGIMEEEKA PEKLSKKIST ISLNDTTTKV EKYLVDKLEE YESAVGDGNT KMAPKIERFP PGFETIPRNP IVLDLAYNCI EFPVLEERKK TERKGFISRL
601: WGGRN
001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW
Arabidopsis Description
Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.