Factsheet for Solyc03g093970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062810.2.1	Tomato	nucleus	95.18	95.18
VIT_17s0000g00300.t01	Wine grape	cytosol	77.41	78.32
CDY00241	Canola	cytosol	75.25	75.25
CDX86945	Canola	cytosol	75.08	75.08
Bra029296.1-P	Field mustard	cytosol	75.08	74.96
CDY30688	Canola	cytosol	75.08	74.83
AT5G61970.1	Thale cress	cytosol	74.75	74.38
GSMUA_Achr9P05240_001	Banana	cytosol	74.25	74.38
KRH59740	Soybean	cytosol, endoplasmic reticulum	73.75	73.63
Bra010045.1-P	Field mustard	cytosol	73.92	73.55
Solyc04g048930.1.1	Tomato	nucleus	9.3	69.14
Solyc02g062840.1.1	Tomato	extracellular	10.63	65.98
HORVU5Hr1G042050.1	Barley	cytosol	64.62	64.73
TraesCS5A01G129400.1	Wheat	cytosol	64.29	64.5
KXG36669	Sorghum	cytosol	62.79	64.07
Os08t0323000-01	Rice	cytosol, plasma membrane	45.68	63.81
TraesCS5D01G136900.2	Wheat	cytosol	64.78	63.73
TraesCS5B01G128000.2	Wheat	cytosol	64.29	63.24
Zm00001d022115_P002	Maize	extracellular, mitochondrion, plasma membrane	61.79	62.94
KRH41061	Soybean	cytosol	71.1	62.12
Solyc02g062830.1.1	Tomato	plasma membrane	15.12	61.07
Zm00001d053170_P001	Maize	cytosol	10.8	47.1
Zm00001d047530_P002	Maize	plastid	13.79	38.97
Os08t0323266-00	Rice	cytosol	4.82	37.18
Zm00001d031206_P001	Maize	cytosol	10.63	35.56

Protein Annotations

Gene3D:1.10.3450.40	MapMan:23.3.1.1.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005047
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0030529
GO:GO:0030942	GO:GO:0045047	InterPro:IPR038253	UniProt:K4BIS2	PFAM:PF16969	PIRSF:PIRSF038995
PANTHER:PTHR12860	InterPro:SRP68	InterPro:SRP68-RBD	InterPro:SRP68_N_sf	EnsemblPlantsGene:Solyc03g093970.2	EnsemblPlants:Solyc03g093970.2.1
UniParc:UPI0002767669	SEG:seg	:	:	:	:

Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:K4BIS2]

Coordinates

chr3:+:55682506..55692672

Molecular Weight (calculated)

68253.0 Da

IEP (calculated)

9.195

GRAVY (calculated)

-0.465

Length

602 amino acids

Sequence
(BLAST)

001: MAKQKETSAM EIDDQSSIPS DQISNPKFSV NVLQLLKSAQ MQHGLRFGDY ARYRRYCTAR LRRLYKSLKF THGRLKYTKR PISITTVTEV RFLHVVLYTA
101: ERAWSHAMEK KTLPDGPNAR QRSYLIGRLR KAVKWASLFQ ELCSIKGDSR TSLEAEAYAA YMKGSLLFEQ DQNWDVALKC FKSARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGESNLQTSE LVSIGEMEGP ALDLFKAKLE AAMAEARSQQ AASMTEFHWL GNRFPISNAK TRVSILKAQE LEKDIHGSAA
301: DSLPAEKKLV LYDKIFAAYH EARSCIRNDL VTAANSENVK DELSGLDKAI GAILGQRTIE RNQLLVKIAK SKLNKVRDDK NEKVTKPEEL VRLYDLLLQN
401: TADLSDLVSS GRDRKMEEIA LAEECELKSM IFRAERCFYL AKSYSSAGKR TEAYALYSRA HSLADAALMK LQSANAADQV IINELRTLCN ESRSNSYVEH
501: AKGIMEEEKA PENLSKKISN ISLNGTDKKM EKLLMEKLDT YESAVGEANM KVAPRIETFP PAFQPVPRNP IVLDLAYNLI DFPSLDARMK KDKKGFISRF
601: WG

Best Arabidopsis Sequence Match ( AT5G61970.1 )
(BLAST)

001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW

Arabidopsis Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.