Factsheet for Zm00001d047530_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053170_P001	Maize	cytosol	56.81	87.68
Zm00001d031206_P001	Maize	cytosol	43.66	51.67
Zm00001d022115_P002	Maize	extracellular, mitochondrion, plasma membrane	51.64	18.61
Solyc02g062840.1.1	Tomato	extracellular	8.45	18.56
Os08t0323000-01	Rice	cytosol, plasma membrane	32.86	16.24
Solyc02g062830.1.1	Tomato	plasma membrane	10.8	15.44
PGSC0003DMT400040071	Potato	cytosol	34.74	14.95
GSMUA_Achr9P05240_001	Banana	cytosol	40.38	14.31
Solyc03g093970.2.1	Tomato	cytosol, plastid	38.97	13.79
CDX86945	Canola	cytosol	38.97	13.79
Solyc02g062810.2.1	Tomato	nucleus	38.5	13.62
CDY00241	Canola	cytosol	38.5	13.62
VIT_17s0000g00300.t01	Wine grape	cytosol	38.03	13.61
KRH59740	Soybean	cytosol, endoplasmic reticulum	38.03	13.43
AT5G61970.1	Thale cress	cytosol	38.03	13.39
CDY30688	Canola	cytosol	37.56	13.24
KRH41061	Soybean	cytosol	38.03	11.76
Bra036933.1-P	Field mustard	cytosol	0.94	2.6
Solyc04g048930.1.1	Tomato	nucleus	0.94	2.47
Os08t0323266-00	Rice	cytosol	0.47	1.28

Protein Annotations

Gene3D:1.10.3450.40	MapMan:35.2	UniProt:A0A1D6PAZ9	ProteinID:AQL06856.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005047	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312
GO:GO:0030942	InterPro:IPR038253	PFAM:PF16969	PANTHER:PTHR12860	InterPro:SRP68	InterPro:SRP68_N_sf
UniParc:UPI0008455641	EnsemblPlantsGene:Zm00001d047530	EnsemblPlants:Zm00001d047530_P002	EnsemblPlants:Zm00001d047530_T002	:	:

Description

signal recognition particle-related / SRP-related

Coordinates

chr9:+:133994940..133998566

Molecular Weight (calculated)

23966.4 Da

IEP (calculated)

6.026

GRAVY (calculated)

-0.446

Length

213 amino acids

Sequence
(BLAST)

001: MAEISPCSVL YGRASMESCH GEENFWYKCK HNVSTCWIDF GKQLNGHHFS QLCSVIGDSR TSLEADTYAS YMKGALFSEQ DKNIDAAIIN FKNTRAIYEE
101: PRKYGSIENE LLCYQCIEEV EPMIDLCSHK LGGSYLQAHE LLDTANDLLN EDGCPQPHWV LPSAIYEPER SGGHPISLGK KMQDIHAEAV KKRRCPTKKP
201: YSRSIVGASL EVI

Best Arabidopsis Sequence Match ( AT5G61970.1 )
(BLAST)

001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW

Arabidopsis Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.