Factsheet for Solyc02g062810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040071	Potato	cytosol	80.73	98.18
Solyc03g093970.2.1	Tomato	cytosol, plastid	95.18	95.18
VIT_17s0000g00300.t01	Wine grape	cytosol	77.91	78.82
GSMUA_Achr9P05240_001	Banana	cytosol	75.08	75.21
CDY00241	Canola	cytosol	74.75	74.75
CDX86945	Canola	cytosol	74.58	74.58
Bra029296.1-P	Field mustard	cytosol	74.42	74.3
CDY30688	Canola	cytosol	74.42	74.17
KRH59740	Soybean	cytosol, endoplasmic reticulum	73.92	73.8
AT5G61970.1	Thale cress	cytosol	73.75	73.39
Bra010045.1-P	Field mustard	cytosol	73.42	73.06
Solyc02g062840.1.1	Tomato	extracellular	10.96	68.04
HORVU5Hr1G042050.1	Barley	cytosol	64.29	64.39
Os08t0323000-01	Rice	cytosol, plasma membrane	46.01	64.27
TraesCS5A01G129400.1	Wheat	cytosol	63.95	64.17
Solyc02g062830.1.1	Tomato	plasma membrane	15.78	63.76
KXG36669	Sorghum	cytosol	62.29	63.56
TraesCS5D01G136900.2	Wheat	cytosol	64.12	63.07
Solyc04g048930.1.1	Tomato	nucleus	8.47	62.96
TraesCS5B01G128000.2	Wheat	cytosol	63.95	62.91
Zm00001d022115_P002	Maize	extracellular, mitochondrion, plasma membrane	61.13	62.27
KRH41061	Soybean	cytosol	70.93	61.97
Zm00001d053170_P001	Maize	cytosol	10.63	46.38
Zm00001d047530_P002	Maize	plastid	13.62	38.5
Zm00001d031206_P001	Maize	cytosol	10.47	35.0
Os08t0323266-00	Rice	cytosol	4.49	34.62

Protein Annotations

Gene3D:1.10.3450.40	MapMan:23.3.1.1.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005047
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0030529
GO:GO:0030942	GO:GO:0045047	InterPro:IPR038253	UniProt:K4B6G9	PFAM:PF16969	PIRSF:PIRSF038995
PANTHER:PTHR12860	InterPro:SRP68	InterPro:SRP68-RBD	InterPro:SRP68_N_sf	EnsemblPlantsGene:Solyc02g062810.2	EnsemblPlants:Solyc02g062810.2.1
UniParc:UPI000276845B	SEG:seg	:	:	:	:

Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:K4B6G9]

Coordinates

chr2:+:34591915..34603998

Molecular Weight (calculated)

68205.0 Da

IEP (calculated)

9.425

GRAVY (calculated)

-0.448

Length

602 amino acids

Sequence
(BLAST)

001: MGKQKESTAM EIEDQSSIPS DQISNLKFSV NVLQLLKSAQ MQHGLRFGDY ARYRRYCTAR LRRLYKSLKF THGRLKYTKR SISVTTVTEV RFLHLVLYTS
101: ERAWSHAMEK KTLPDGPNAR QRSYLIGRLR KAVKWASLFQ ELCSIKGDSR TSLEAEAYAA YMKGSLLFEK DQNWDVALKC FKSARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGESNLQTSE LVSIGEIEGP ALDLFKAKLE AAMAEARSQQ AASMTEFHWL GNRFPISNAK TRVSILKAQE LEKDIHGSAA
301: DSLPAEKKLV LYDKIFAAYH EARSCIRNDL VTAANSENVK DELSGLDKAV GAILGQRTIE RNQLLVKIAK SKLNKVRDDK NEKVTKPEEL VRLYDLLLQN
401: TADLSDLVSS GRDRKIEEVA LAEECELKSM VFRAERCFYL AKSYSSAGKR TEAYALYSRA RSLADAALMK LQSANAADLV MIKELKTLYN ESRSNSCAEH
501: ARGIMEEEKA PENLSKKISN ISLNGTDKKM EKLLMEKLDT YESAVGEANV KVVPRIETFP PAFQPVARNP IVLDLAYNLI EFPSLDSRMK KDKKGFISRF
601: WG

Best Arabidopsis Sequence Match ( AT5G61970.1 )
(BLAST)

001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW

Arabidopsis Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.