Factsheet for Solyc02g062840.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
endoplasmic reticulum 3
mitochondrion 1
extracellular 4
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	endoplasmic reticulum
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062830.1.1	Tomato	plasma membrane	63.92	41.61
Zm00001d053170_P001	Maize	cytosol	16.49	11.59
Solyc02g062810.2.1	Tomato	nucleus	68.04	10.96
Solyc03g093970.2.1	Tomato	cytosol, plastid	65.98	10.63
CDX86945	Canola	cytosol	61.86	9.97
CDY00241	Canola	cytosol	61.86	9.97
Bra010045.1-P	Field mustard	cytosol	61.86	9.92
PGSC0003DMT400040071	Potato	cytosol	50.52	9.9
Bra029296.1-P	Field mustard	cytosol	60.82	9.78
CDY30688	Canola	cytosol	60.82	9.77
AT5G61970.1	Thale cress	cytosol	59.79	9.59
VIT_17s0000g00300.t01	Wine grape	cytosol	58.76	9.58
KRH59740	Soybean	cytosol, endoplasmic reticulum	58.76	9.45
KXG36669	Sorghum	cytosol	56.7	9.32
GSMUA_Achr9P05240_001	Banana	cytosol	57.73	9.32
TraesCS5A01G129400.1	Wheat	cytosol	56.7	9.17
Zm00001d022115_P002	Maize	extracellular, mitochondrion, plasma membrane	55.67	9.14
TraesCS5B01G128000.2	Wheat	cytosol	56.7	8.99
TraesCS5D01G136900.2	Wheat	cytosol	56.7	8.99
HORVU5Hr1G042050.1	Barley	cytosol	55.67	8.99
Zm00001d047530_P002	Maize	plastid	18.56	8.45
KRH41061	Soybean	cytosol	55.67	7.84
Zm00001d031206_P001	Maize	cytosol	14.43	7.78
Solyc04g048930.1.1	Tomato	nucleus	3.09	3.7
Os08t0323266-00	Rice	cytosol	2.06	2.56
Os08t0323000-01	Rice	cytosol, plasma membrane	4.12	0.93

Protein Annotations

Gene3D:1.10.3450.40	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005047
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0016020
GO:GO:0016021	GO:GO:0030942	GO:GO:0045047	InterPro:IPR038253	UniProt:K4B6H2	PFAM:PF16969
PANTHER:PTHR12860	InterPro:SRP68	InterPro:SRP68_N_sf	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc02g062840.1	EnsemblPlants:Solyc02g062840.1.1
TMHMM:TMhelix	UniParc:UPI000276845E	:	:	:	:

Description

No Description!

Coordinates

chr2:+:34693026..34693319

Molecular Weight (calculated)

11336.2 Da

IEP (calculated)

8.599

GRAVY (calculated)

0.281

Length

97 amino acids

Sequence
(BLAST)

1: MIYACCRFLH LVLYTTEIAW SHAMEKKTLP DKPNAHQRIY LIGRLRKAVK WASLFQELCS TKGDSRTSLE AEVCFYCVII LIYMAMCLLM RALEFSH

Best Arabidopsis Sequence Match ( AT5G61970.1 )
(BLAST)

001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW

Arabidopsis Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.