Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G128000.2 | Wheat | cytosol | 98.04 | 98.04 |
| HORVU5Hr1G042050.1 | Barley | cytosol | 94.44 | 96.17 |
| TraesCS5A01G129400.1 | Wheat | cytosol | 94.12 | 96.0 |
| Os08t0323000-01 | Rice | cytosol, plasma membrane | 60.29 | 85.61 |
| KXG36669 | Sorghum | cytosol | 80.72 | 83.73 |
| Zm00001d022115_P002 | Maize | extracellular, mitochondrion, plasma membrane | 79.9 | 82.74 |
| GSMUA_Achr9P05240_001 | Banana | cytosol | 67.81 | 69.05 |
| VIT_17s0000g00300.t01 | Wine grape | cytosol | 65.36 | 67.23 |
| CDY30688 | Canola | cytosol | 64.87 | 65.73 |
| CDY00241 | Canola | cytosol | 64.22 | 65.28 |
| PGSC0003DMT400040071 | Potato | cytosol | 52.61 | 65.05 |
| CDX86945 | Canola | cytosol | 63.89 | 64.95 |
| Solyc03g093970.2.1 | Tomato | cytosol, plastid | 63.73 | 64.78 |
| AT5G61970.1 | Thale cress | cytosol | 63.4 | 64.13 |
| Solyc02g062810.2.1 | Tomato | nucleus | 63.07 | 64.12 |
| KRH59740 | Soybean | cytosol, endoplasmic reticulum | 62.25 | 63.18 |
| Os08t0323266-00 | Rice | cytosol | 7.84 | 61.54 |
| Solyc02g062840.1.1 | Tomato | extracellular | 8.99 | 56.7 |
| KRH41061 | Soybean | cytosol | 58.5 | 51.96 |
| Bra036933.1-P | Field mustard | cytosol | 6.21 | 49.35 |
| Solyc02g062830.1.1 | Tomato | plasma membrane | 11.76 | 48.32 |
| Solyc04g048930.1.1 | Tomato | nucleus | 4.9 | 37.04 |
Protein Annotations
| Gene3D:1.10.3450.40 | MapMan:23.3.1.1.6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005047 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005786 |
| GO:GO:0006614 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008312 | GO:GO:0030942 | InterPro:IPR038253 |
| PFAM:PF16969 | PIRSF:PIRSF038995 | PANTHER:PTHR12860 | InterPro:SRP68 | InterPro:SRP68-RBD | InterPro:SRP68_N_sf |
| EnsemblPlantsGene:TraesCS5D01G136900 | EnsemblPlants:TraesCS5D01G136900.2 | TIGR:cd15481 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5D:+:217649479..217656786
Molecular Weight (calculated)
69417.8 Da
IEP (calculated)
8.720
GRAVY (calculated)
-0.498
Length
612 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKLANQPAP PSSDMDVDSA AAVEEKNPVR FSINVLELMR EAQMQHGLRH GDYTRYRRYC TARLRRLYKS LKFLHGRGKY TRRNITESTV TDVRFLHVVF
101: YTAERAWSHA MEKKTAGPNA PQRIYMLGRF RKAVKWAALF SQLCSIKGDS RTSLEAEAYA SYMKGTLLFE QEKNIEAAML NFKNTRTVYE ELGKYGSIEN
201: QLLCRQRIEE VEPMIGFCSR KLGGSALQEH DLLDMEKEGP AYDLFKAKIE AVLSETRSQQ AASMTEFNWL GRRFPITSAK TRVSILKAQQ LEKDLNGAAT
301: EPIPADKKLA IFDKLFSAYH EARSCIRNDL ASAGNAENIR DELNGLDKAV SAVLGLRTIE RNQLLVTIAK SKFAKHWDEK NEKITKPEEL VRLYDLLIQN
401: TTDLTDLVSS GRDKNEEENA FVREYELKDL AFRAERCFYL AKSYSSVSKR AEAYALFSYA HSLADSALQE LANSPHKVLQ SNSNALTLQT LIQDLEALSF
501: NCRSNSCIEH ATGIMEDESA PERLSKGVST ISLGDDKRKD TKYLLDILGS YESALGEQSA KAPCRISQFP PPFQSVPCNP IVLDMAYNTI EFPNLENRMK
601: KEKKGLLRRF WG
101: YTAERAWSHA MEKKTAGPNA PQRIYMLGRF RKAVKWAALF SQLCSIKGDS RTSLEAEAYA SYMKGTLLFE QEKNIEAAML NFKNTRTVYE ELGKYGSIEN
201: QLLCRQRIEE VEPMIGFCSR KLGGSALQEH DLLDMEKEGP AYDLFKAKIE AVLSETRSQQ AASMTEFNWL GRRFPITSAK TRVSILKAQQ LEKDLNGAAT
301: EPIPADKKLA IFDKLFSAYH EARSCIRNDL ASAGNAENIR DELNGLDKAV SAVLGLRTIE RNQLLVTIAK SKFAKHWDEK NEKITKPEEL VRLYDLLIQN
401: TTDLTDLVSS GRDKNEEENA FVREYELKDL AFRAERCFYL AKSYSSVSKR AEAYALFSYA HSLADSALQE LANSPHKVLQ SNSNALTLQT LIQDLEALSF
501: NCRSNSCIEH ATGIMEDESA PERLSKGVST ISLGDDKRKD TKYLLDILGS YESALGEQSA KAPCRISQFP PPFQSVPCNP IVLDMAYNTI EFPNLENRMK
601: KEKKGLLRRF WG
001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW
Arabidopsis Description
Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.