Factsheet for VIT_17s0000g00300.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040071	Potato	cytosol	65.38	78.59
Solyc02g062810.2.1	Tomato	nucleus	78.82	77.91
Solyc03g093970.2.1	Tomato	cytosol, plastid	78.32	77.41
KRH59740	Soybean	cytosol, endoplasmic reticulum	77.31	76.29
GSMUA_Achr9P05240_001	Banana	cytosol	76.13	75.37
CDY00241	Canola	cytosol	75.13	74.25
AT5G61970.1	Thale cress	cytosol	75.29	74.05
Bra029296.1-P	Field mustard	cytosol	74.96	73.96
CDX86945	Canola	cytosol	74.79	73.92
CDY30688	Canola	cytosol	74.96	73.84
Bra010045.1-P	Field mustard	cytosol	74.12	72.89
KXG36669	Sorghum	cytosol	65.88	66.44
TraesCS5A01G129400.1	Wheat	cytosol	66.55	66.0
Zm00001d022115_P002	Maize	extracellular, mitochondrion, plasma membrane	65.21	65.65
HORVU5Hr1G042050.1	Barley	cytosol	66.22	65.56
TraesCS5D01G136900.2	Wheat	cytosol	67.23	65.36
Os08t0323000-01	Rice	cytosol, plasma membrane	47.23	65.2
TraesCS5B01G128000.2	Wheat	cytosol	66.89	65.03
KRH41061	Soybean	cytosol	73.61	63.57
Solyc02g062840.1.1	Tomato	extracellular	9.58	58.76
Solyc04g048930.1.1	Tomato	nucleus	7.39	54.32
Solyc02g062830.1.1	Tomato	plasma membrane	13.11	52.35
Zm00001d053170_P001	Maize	cytosol	10.92	47.1
Os08t0323266-00	Rice	cytosol	5.38	41.03
Zm00001d031206_P001	Maize	cytosol	11.6	38.33
Zm00001d047530_P002	Maize	plastid	13.61	38.03

Protein Annotations

Gene3D:1.10.3450.40	EntrezGene:100262919	wikigene:100262919	MapMan:23.3.1.1.6	UniProt:A5BG91	EMBL:AM458473
ProteinID:CAN67894	ProteinID:CAN67894.1	ProteinID:CBI15751	ProteinID:CBI15751.3	EMBL:FN594950	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005047	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005786	GO:GO:0005829	GO:GO:0006614
GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0030529	GO:GO:0030942	GO:GO:0045047
InterPro:IPR038253	EntrezGene:LOC100262919	wikigene:LOC100262919	PFAM:PF16969	PIRSF:PIRSF038995	PANTHER:PTHR12860
InterPro:SRP68	InterPro:SRP68-RBD	InterPro:SRP68_N_sf	TIGR:TC62199	UniParc:UPI0001520C4A	ArrayExpress:VIT_17s0000g00300
EnsemblPlantsGene:VIT_17s0000g00300	EnsemblPlants:VIT_17s0000g00300.t01	unigene:Vvi.1097	RefSeq:XP_002284577	RefSeq:XP_002284577.1	SEG:seg

Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:A5BG91]

Coordinates

chr17:+:191926..199990

Molecular Weight (calculated)

67617.1 Da

IEP (calculated)

9.581

GRAVY (calculated)

-0.508

Length

595 amino acids

Sequence
(BLAST)

001: MGKENQVSDM QIDDQKSNSD HANPKFSINV LQLLKSAQMQ HGLRHGDYTR YRRYCTARLR RLYKSLKFTH GRGKYTRRSI TESTVTEVRF LHLILYTAER
101: AWSHAMEKRQ LPDGPNARQR IYLIGRLRKA VKWATLFSQL CAIKGDSKTS LEAEAYASYM KGTLLFEQDQ NWDMALKLFK SSRAVYEELG KYGDLENQVL
201: CRERVEELEP SIRYCLHKIG ASNSLTPELL HMEGPALDLF RAKLEAVMAE ARSQQAASMT EFHWLGHRFP ISNAKTRVSI LKAQDLEKDL HGPAADSLPA
301: EKKLGIFDKI FTAYHEARSS IRNDLVTAGS AGNMKDDLNG LDKAVSAVLG ERTIERNQLL IRIAKSKLTK QEKNEKATKP EELVRLYDLL LQNVADLSDL
401: VSSGRDRKPE EVSFTEECAL KSLAFRAERC FYLAKSYSLA GKRTEAYALY SHARSLADDA LQKLQASSNN DQTLIKGLKM LYNDCRSNSC IEHATVIMEE
501: EKAPENLSQK ISNISLAGAH KKVETSLMEK LDVYESLVGA SNVKSVPRIE AFPPAFQTIP RNPIVLDIAY NFVDFPSLEN RMKKDKKGFI SRLWR

Best Arabidopsis Sequence Match ( AT5G61970.1 )
(BLAST)

001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW

Arabidopsis Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.