CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029296.1-P	Field mustard	cytosol	99.34	99.5
CDY00241	Canola	cytosol	91.23	91.53
CDX86945	Canola	cytosol	90.89	91.2
AT5G61970.1	Thale cress	cytosol	89.24	89.09
PGSC0003DMT400040071	Potato	cytosol	62.58	76.36
Solyc03g093970.2.1	Tomato	cytosol, plastid	74.83	75.08
VIT_17s0000g00300.t01	Wine grape	cytosol	73.84	74.96
Solyc02g062810.2.1	Tomato	nucleus	74.17	74.42
KRH59740	Soybean	cytosol, endoplasmic reticulum	72.19	72.31
GSMUA_Achr9P05240_001	Banana	cytosol	71.36	71.71
HORVU5Hr1G042050.1	Barley	cytosol	66.39	66.72
TraesCS5A01G129400.1	Wheat	cytosol	65.73	66.17
Os08t0323000-01	Rice	cytosol, plasma membrane	46.69	65.43
TraesCS5B01G128000.2	Wheat	cytosol	66.23	65.36
KXG36669	Sorghum	cytosol	63.58	65.08
TraesCS5D01G136900.2	Wheat	cytosol	65.73	64.87
Zm00001d022115_P002	Maize	extracellular, mitochondrion, plasma membrane	63.41	64.81
Solyc02g062840.1.1	Tomato	extracellular	9.77	60.82
KRH41061	Soybean	cytosol	69.21	60.67
Solyc02g062830.1.1	Tomato	plasma membrane	12.42	50.34
Solyc04g048930.1.1	Tomato	nucleus	6.29	46.91
Zm00001d053170_P001	Maize	cytosol	10.43	45.65
Zm00001d047530_P002	Maize	plastid	13.24	37.56
Zm00001d031206_P001	Maize	cytosol	11.09	37.22
Os08t0323266-00	Rice	cytosol	4.8	37.18

Protein Annotations

Gene3D:1.10.3450.40	MapMan:23.3.1.1.6	GO:A0A078H1L2	UniProt:A0A078H1L2	EnsemblPlants:CDY30688	ProteinID:CDY30688
ProteinID:CDY30688.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005047
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0030529	GO:GO:0030942
EnsemblPlantsGene:GSBRNA2T00046019001	InterPro:IPR038253	PFAM:PF16969	PIRSF:PIRSF038995	PANTHER:PTHR12860	InterPro:SRP68
InterPro:SRP68-RBD	InterPro:SRP68_N_sf	UniParc:UPI0004EDBB07	SEG:seg	:	:

Description

BnaA02g33100DSignal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:A0A078H1L2]

Coordinates

chrLK032258:+:23982..28256

Molecular Weight (calculated)

68772.4 Da

IEP (calculated)

9.151

GRAVY (calculated)

-0.556

Length

604 amino acids

Sequence
(BLAST)

001: MGKKENEMSA MEIDDPKLDG SDQILPRFSM NVLQLMKTSQ AQHGLRRGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTNV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLIGRLR KAVKWATLFS SLCSVKTDSR TSLEAEAYAS YMKGTMLFEQ DQNWETALAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSVQYCLHK IGKANLQTSD LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFNWL GYRFPVSNPK SRVSILKAQE LEKDLQGPTA
301: ESLPAEKKLT IFDKLFTAYN DARNTIRSDL VSAGNAESVK DELNGLDKAV GAVLGQRTIE RNQLLVKIAK SKLNRKRDDK NEKVTKPEEL VRLYDLLLQN
401: VADLSDLVSS GRDRKPEEIA FEEECERKNL AFRAERCFYL GKSYSLAGKR VEAYALFCRA RSLAEDALNK FQNIGNKDEG TIQELKTLSR ECRASSCIEH
501: ATGIMEEEKA PENLSKKISA ISLNETATKA EKYLLDKLDV YESAVGDANT KMAPKIERFP PAFQSIPRNP IVLDLAYNCI EFPVLEERMK KGRGGFMSRF
601: FRSG

Best Arabidopsis Sequence Match ( AT5G61970.1 )
(BLAST)

001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW

Arabidopsis Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.