Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G129400.1 | Wheat | cytosol | 96.67 | 96.83 |
| TraesCS5B01G128000.2 | Wheat | cytosol | 97.0 | 95.26 |
| TraesCS5D01G136900.2 | Wheat | cytosol | 96.17 | 94.44 |
| Os08t0323000-01 | Rice | cytosol, plasma membrane | 62.23 | 86.77 |
| KXG36669 | Sorghum | cytosol | 83.36 | 84.92 |
| Zm00001d022115_P002 | Maize | extracellular, mitochondrion, plasma membrane | 82.53 | 83.93 |
| GSMUA_Achr9P05240_001 | Banana | cytosol | 69.22 | 69.22 |
| CDY30688 | Canola | cytosol | 66.72 | 66.39 |
| VIT_17s0000g00300.t01 | Wine grape | cytosol | 65.56 | 66.22 |
| CDY00241 | Canola | cytosol | 66.06 | 65.95 |
| CDX86945 | Canola | cytosol | 65.72 | 65.61 |
| PGSC0003DMT400040071 | Potato | cytosol | 53.74 | 65.25 |
| AT5G61970.1 | Thale cress | cytosol | 65.06 | 64.63 |
| Solyc03g093970.2.1 | Tomato | cytosol, plastid | 64.73 | 64.62 |
| Solyc02g062810.2.1 | Tomato | nucleus | 64.39 | 64.29 |
| KRH59740 | Soybean | cytosol, endoplasmic reticulum | 63.73 | 63.52 |
| Os08t0323266-00 | Rice | cytosol | 7.99 | 61.54 |
| Solyc02g062840.1.1 | Tomato | extracellular | 8.99 | 55.67 |
| KRH41061 | Soybean | cytosol | 59.73 | 52.1 |
| Bra036933.1-P | Field mustard | cytosol | 6.32 | 49.35 |
| Solyc02g062830.1.1 | Tomato | plasma membrane | 11.81 | 47.65 |
| Solyc04g048930.1.1 | Tomato | nucleus | 5.16 | 38.27 |
Protein Annotations
| Gene3D:1.10.3450.40 | MapMan:23.3.1.1.6 | EMBL:AK367030 | UniProt:F2DT12 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005047 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005786 | GO:GO:0006614 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008312 |
| GO:GO:0030529 | GO:GO:0030942 | EnsemblPlantsGene:HORVU5Hr1G042050 | EnsemblPlants:HORVU5Hr1G042050.1 | InterPro:IPR038253 | PFAM:PF16969 |
| PIRSF:PIRSF038995 | PANTHER:PTHR12860 | InterPro:SRP68 | InterPro:SRP68-RBD | InterPro:SRP68_N_sf | UniParc:UPI0002006F27 |
| SEG:seg | : | : | : | : | : |
Description
Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:F2DT12]
Coordinates
chrchr5H:+:320331657..320340348
Molecular Weight (calculated)
68214.5 Da
IEP (calculated)
8.760
GRAVY (calculated)
-0.521
Length
601 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKLANQPPP PTPSDMDVDS ASAAEEKNPV RFSINVLELM REAQMQHGLR HGDYTRYRRY CTARLRRLYK SLKFLHGRGK YTRRNITEST VTDVRFLHVV
101: FYMAERAWSH AMEKKTAGPN APQRIYMLGR FRKAVKWAAL FSQLCSIKGD SRTSLEAEAY ASYMKGTLLF EQEKNIEAAM LNFKNTRTVY EELGKYGSIE
201: NQLLCRQRIE EVEPMIGFCS RKLGGSALQE HELLDMEKEG PAYDLFKAKI EAVLSETRSQ QAASMTEFNW LGRRFPITSA KTRVSILKAQ QLERDLNGAA
301: TEPIPADKKL AIFDKLFSAY HEARSCIRND LASAGNAENI RDELNGLDKA VSAVLGLRTI ERNQLLVSIA KSKFAKHRDD KNEKITKPEE LVRLYDLLIQ
401: NTTDLTDLVS SGRDKNEEEN AFLHEYELKD LAFRAERCFY LAKSYSSVSK RAEAYALFCY ARSLADSALQ ELANSPHKAL IQELEALSSN CRSSSCIEHA
501: TGIMEDESAP ERLSKGVSTI SLGDDKRKDT KYLLDILGSY ESALGEQSAK APCRISQFPP PFQSVPCNPI VLDMAYNTIE FPNLENRMKK EKKGLLRRFW
601: G
101: FYMAERAWSH AMEKKTAGPN APQRIYMLGR FRKAVKWAAL FSQLCSIKGD SRTSLEAEAY ASYMKGTLLF EQEKNIEAAM LNFKNTRTVY EELGKYGSIE
201: NQLLCRQRIE EVEPMIGFCS RKLGGSALQE HELLDMEKEG PAYDLFKAKI EAVLSETRSQ QAASMTEFNW LGRRFPITSA KTRVSILKAQ QLERDLNGAA
301: TEPIPADKKL AIFDKLFSAY HEARSCIRND LASAGNAENI RDELNGLDKA VSAVLGLRTI ERNQLLVSIA KSKFAKHRDD KNEKITKPEE LVRLYDLLIQ
401: NTTDLTDLVS SGRDKNEEEN AFLHEYELKD LAFRAERCFY LAKSYSSVSK RAEAYALFCY ARSLADSALQ ELANSPHKAL IQELEALSSN CRSSSCIEHA
501: TGIMEDESAP ERLSKGVSTI SLGDDKRKDT KYLLDILGSY ESALGEQSAK APCRISQFPP PFQSVPCNPI VLDMAYNTIE FPNLENRMKK EKKGLLRRFW
601: G
001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW
Arabidopsis Description
Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.