Factsheet for PGSC0003DMT400040071

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062810.2.1	Tomato	nucleus	98.18	80.73
VIT_17s0000g00300.t01	Wine grape	cytosol	78.59	65.38
Os08t0323000-01	Rice	cytosol, plasma membrane	55.76	64.04
GSMUA_Achr9P05240_001	Banana	cytosol	76.77	63.23
CDY00241	Canola	cytosol	76.57	62.96
CDX86945	Canola	cytosol	76.36	62.79
Bra029296.1-P	Field mustard	cytosol	76.36	62.69
CDY30688	Canola	cytosol	76.36	62.58
AT5G61970.1	Thale cress	cytosol	75.15	61.49
Bra010045.1-P	Field mustard	cytosol	74.95	61.32
KRH59740	Soybean	cytosol, endoplasmic reticulum	74.14	60.86
HORVU5Hr1G042050.1	Barley	cytosol	65.25	53.74
TraesCS5A01G129400.1	Wheat	cytosol	64.85	53.5
KXG36669	Sorghum	cytosol	63.03	52.88
TraesCS5B01G128000.2	Wheat	cytosol	65.05	52.61
TraesCS5D01G136900.2	Wheat	cytosol	65.05	52.61
Zm00001d022115_P002	Maize	extracellular, mitochondrion, plasma membrane	62.22	52.12
KRH41061	Soybean	cytosol	70.51	50.65
Solyc02g062840.1.1	Tomato	extracellular	9.9	50.52
Zm00001d053170_P001	Maize	cytosol	11.72	42.03
Zm00001d047530_P002	Maize	plastid	14.95	34.74
Zm00001d031206_P001	Maize	cytosol	12.32	33.89
Solyc02g062830.1.1	Tomato	plasma membrane	9.09	30.2
Os08t0323266-00	Rice	cytosol	0.61	3.85

Protein Annotations

Gene3D:1.10.3450.40	EntrezGene:102586149	MapMan:23.3.1.1.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005047	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005786	GO:GO:0005829	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312
GO:GO:0030942	InterPro:IPR038253	UniProt:M1B992	PFAM:PF16969	EnsemblPlantsGene:PGSC0003DMG400015501	PGSC:PGSC0003DMG400015501
EnsemblPlants:PGSC0003DMT400040071	PANTHER:PTHR12860	InterPro:SRP68	InterPro:SRP68_N_sf	UniParc:UPI0002960BA1	RefSeq:XP_006346945.1
SEG:seg	:	:	:	:	:

Description

Signal recognition particle 68 kDa protein [Source:PGSC_GENE;Acc:PGSC0003DMG400015501]

Coordinates

chr2:+:21220797..21232834

Molecular Weight (calculated)

55733.9 Da

IEP (calculated)

8.342

GRAVY (calculated)

-0.451

Length

495 amino acids

Sequence
(BLAST)

001: MEKKTLPDGP NARQRSYLIG RLRKAVKWAS LFQELCSIKG DSRTSLEAEA YAAYMKGSLL FEKDQNWDVA LKCFKSARAV YEELGKYGDL ENQVLCRERV
101: EELEPSIRYC LHKIGESNLQ TSELVSIGEI EGPALDLFKA KLEAAMAEAR SQQAASMTEF HWLGNRFPIS NAKIRVSILK AQELEKDIHG SAADSLPAEK
201: KLVLYDKIFA AYHEARSCIR NDLVTAANSE NVKDELSGLD KAVGAILGQR TIERNQLLVK IAKSKLNKVR DDKNEKVTKP EELVRLYDLL LQNTADLSDL
301: VSSGRDRKVE EVALAEECEL RSMAFRAERC FYLAKSYSSA GKRTEAYALY SRARSLADAA LMKLQSANAA DQVMIKELRT LYNESRSNSC AEHAKGIMEE
401: EKAPENLSKK ISNISLNGTD KKMEKLLMEK LDTYESAVGE ANMKVVPRIE TFPPAFQPVP RNPIVLDLAY NLIEFPSLDS RMKKDKKGFI SRFWG

Best Arabidopsis Sequence Match ( AT5G61970.1 )
(BLAST)

001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW

Arabidopsis Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.