Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G042050.1 | Barley | cytosol | 96.83 | 96.67 |
| TraesCS5B01G128000.2 | Wheat | cytosol | 97.17 | 95.26 |
| TraesCS5D01G136900.2 | Wheat | cytosol | 96.0 | 94.12 |
| Os08t0323000-01 | Rice | cytosol, plasma membrane | 62.0 | 86.31 |
| KXG36669 | Sorghum | cytosol | 83.33 | 84.75 |
| Zm00001d022115_P002 | Maize | extracellular, mitochondrion, plasma membrane | 82.5 | 83.76 |
| GSMUA_Achr9P05240_001 | Banana | cytosol | 69.17 | 69.05 |
| VIT_17s0000g00300.t01 | Wine grape | cytosol | 66.0 | 66.55 |
| CDY30688 | Canola | cytosol | 66.17 | 65.73 |
| CDY00241 | Canola | cytosol | 65.5 | 65.28 |
| CDX86945 | Canola | cytosol | 65.17 | 64.95 |
| PGSC0003DMT400040071 | Potato | cytosol | 53.5 | 64.85 |
| Solyc03g093970.2.1 | Tomato | cytosol, plastid | 64.5 | 64.29 |
| AT5G61970.1 | Thale cress | cytosol | 64.5 | 63.97 |
| Solyc02g062810.2.1 | Tomato | nucleus | 64.17 | 63.95 |
| KRH59740 | Soybean | cytosol, endoplasmic reticulum | 63.5 | 63.18 |
| Os08t0323266-00 | Rice | cytosol | 8.0 | 61.54 |
| Solyc02g062840.1.1 | Tomato | extracellular | 9.17 | 56.7 |
| KRH41061 | Soybean | cytosol | 59.5 | 51.81 |
| Bra036933.1-P | Field mustard | cytosol | 6.33 | 49.35 |
| Solyc02g062830.1.1 | Tomato | plasma membrane | 11.83 | 47.65 |
| Solyc04g048930.1.1 | Tomato | nucleus | 5.17 | 38.27 |
Protein Annotations
| Gene3D:1.10.3450.40 | MapMan:23.3.1.1.6 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005047 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005786 |
| GO:GO:0006614 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008312 | GO:GO:0030942 | InterPro:IPR038253 |
| PFAM:PF16969 | PIRSF:PIRSF038995 | PANTHER:PTHR12860 | InterPro:SRP68 | InterPro:SRP68-RBD | InterPro:SRP68_N_sf |
| EnsemblPlantsGene:TraesCS5A01G129400 | EnsemblPlants:TraesCS5A01G129400.1 | TIGR:cd15481 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5A:+:290386719..290395310
Molecular Weight (calculated)
68106.5 Da
IEP (calculated)
8.864
GRAVY (calculated)
-0.502
Length
600 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKLANQPPP PPSDMDIDSA AAVEEKNPVR FSINVLELMR EAQMQHGLRH GDYTRYRRYC TARLRRLYKS LKFLHGRGKY TRRNITESTV TDVRFLHVVF
101: YMAERAWSHA MEKKTAGPNA PQRIYMLGRF RKAVKWAALF SQLCSIKGDS RTSLEAEAYA SYMKGTLLFE QEKNIEAAML NFKNTRTVYE ELGKYGGIEN
201: QLLCRQRIEE VEPMIGFCSR KLGGSALQEH DLLDMEKEGP AYDLFKAKIE AVLSETRSQQ AASMTEFNWL GRRFPITSAK TRVSILKAQQ LERDLNGAAT
301: EPISADKKLA IFDKLFSAYH EARSCIRNDL ASAGSAENIR DELNGLDKAV SAVLGLRTIE RNQLLVSIAK SKFAKHRDEK NEKITKPEEL VRLYDLLIQN
401: TTDLTDLVSS GRDKNEEENA FVHEYELKDL AFRAERCFYL AKSYSSVSKR AEAYALFCYA RSLADSALQE LANSPHKALI QDLEALSFNC RSNSCIEHAT
501: GIMEDESAPE RLSKGVSTIS LGDNRKKDPK YLLDILGSYE SALGEQSAKA PCRISQFPPP FQPVPCNPIV LDMAYNAIEF PNLENRMKKE KKGLLRRFWG
101: YMAERAWSHA MEKKTAGPNA PQRIYMLGRF RKAVKWAALF SQLCSIKGDS RTSLEAEAYA SYMKGTLLFE QEKNIEAAML NFKNTRTVYE ELGKYGGIEN
201: QLLCRQRIEE VEPMIGFCSR KLGGSALQEH DLLDMEKEGP AYDLFKAKIE AVLSETRSQQ AASMTEFNWL GRRFPITSAK TRVSILKAQQ LERDLNGAAT
301: EPISADKKLA IFDKLFSAYH EARSCIRNDL ASAGSAENIR DELNGLDKAV SAVLGLRTIE RNQLLVSIAK SKFAKHRDEK NEKITKPEEL VRLYDLLIQN
401: TTDLTDLVSS GRDKNEEENA FVHEYELKDL AFRAERCFYL AKSYSSVSKR AEAYALFCYA RSLADSALQE LANSPHKALI QDLEALSFNC RSNSCIEHAT
501: GIMEDESAPE RLSKGVSTIS LGDNRKKDPK YLLDILGSYE SALGEQSAKA PCRISQFPPP FQPVPCNPIV LDMAYNAIEF PNLENRMKKE KKGLLRRFWG
001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW
Arabidopsis Description
Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.