Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00241 | Canola | cytosol | 99.17 | 99.17 |
| Bra010045.1-P | Field mustard | cytosol | 96.51 | 96.03 |
| CDY30688 | Canola | cytosol | 91.2 | 90.89 |
| AT5G61970.1 | Thale cress | cytosol | 89.7 | 89.26 |
| PGSC0003DMT400040071 | Potato | cytosol | 62.79 | 76.36 |
| Solyc03g093970.2.1 | Tomato | cytosol, plastid | 75.08 | 75.08 |
| VIT_17s0000g00300.t01 | Wine grape | cytosol | 73.92 | 74.79 |
| Solyc02g062810.2.1 | Tomato | nucleus | 74.58 | 74.58 |
| GSMUA_Achr9P05240_001 | Banana | cytosol | 71.59 | 71.71 |
| KRH59740 | Soybean | cytosol, endoplasmic reticulum | 71.43 | 71.31 |
| HORVU5Hr1G042050.1 | Barley | cytosol | 65.61 | 65.72 |
| TraesCS5A01G129400.1 | Wheat | cytosol | 64.95 | 65.17 |
| KXG36669 | Sorghum | cytosol | 63.79 | 65.08 |
| Zm00001d022115_P002 | Maize | extracellular, mitochondrion, plasma membrane | 63.62 | 64.81 |
| Os08t0323000-01 | Rice | cytosol, plasma membrane | 46.35 | 64.73 |
| TraesCS5B01G128000.2 | Wheat | cytosol | 65.61 | 64.54 |
| TraesCS5D01G136900.2 | Wheat | cytosol | 64.95 | 63.89 |
| Solyc02g062840.1.1 | Tomato | extracellular | 9.97 | 61.86 |
| KRH41061 | Soybean | cytosol | 68.94 | 60.23 |
| Solyc02g062830.1.1 | Tomato | plasma membrane | 12.62 | 51.01 |
| Solyc04g048930.1.1 | Tomato | nucleus | 6.48 | 48.15 |
| Zm00001d053170_P001 | Maize | cytosol | 10.96 | 47.83 |
| Zm00001d047530_P002 | Maize | plastid | 13.79 | 38.97 |
| Os08t0323266-00 | Rice | cytosol | 4.98 | 38.46 |
| Zm00001d031206_P001 | Maize | cytosol | 10.96 | 36.67 |
Protein Annotations
| Gene3D:1.10.3450.40 | MapMan:23.3.1.1.6 | GO:A0A078DCI5 | EnsemblPlants:CDX86945 | ProteinID:CDX86945 | ProteinID:CDX86945.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005047 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005786 | GO:GO:0006614 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008312 | GO:GO:0030942 | EnsemblPlantsGene:GSBRNA2T00145762001 | InterPro:IPR038253 |
| PFAM:PF16969 | PIRSF:PIRSF038995 | PANTHER:PTHR12860 | InterPro:SRP68 | InterPro:SRP68-RBD | InterPro:SRP68_N_sf |
| UniParc:UPI0004EE8902 | SEG:seg | : | : | : | : |
Description
BnaC03g52150D
Coordinates
chrLK031848:-:660315..664687
Molecular Weight (calculated)
68634.1 Da
IEP (calculated)
9.127
GRAVY (calculated)
-0.571
Length
602 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKENEMSA MEIDDPKSDG SEQILPRFSM NVLQLMKTSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMT
101: ERAWSHAMDK RQLPDGPNAR QRIYLIGRLR KAVKWASLFS SLCSNKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWDTALAC FRNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIEYCKHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFNWL GYRFPVSNPK SRVSILKAQD FEKELQGLGA
301: ESLPAEKKLT IYDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKIAK SKLNKKRDDK TEKVTKPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRKSL AFRAERCFYL AKSYSLAGKR VEAYALYCRA RSLAEDALSK FQSIANKDEG TIQELKAVSK ECRANSCIEH
501: ATGIMEEEKA PEKLSKKIST ISLNDTATKV EKYLVDKLEV YESAVGDANT KMAPKIERFP PAFQSIPRNP IVLDLAYNCI EFPVLDERKK KVQRGFISRL
601: WG
101: ERAWSHAMDK RQLPDGPNAR QRIYLIGRLR KAVKWASLFS SLCSNKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWDTALAC FRNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIEYCKHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFNWL GYRFPVSNPK SRVSILKAQD FEKELQGLGA
301: ESLPAEKKLT IYDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKIAK SKLNKKRDDK TEKVTKPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRKSL AFRAERCFYL AKSYSLAGKR VEAYALYCRA RSLAEDALSK FQSIANKDEG TIQELKAVSK ECRANSCIEH
501: ATGIMEEEKA PEKLSKKIST ISLNDTATKV EKYLVDKLEV YESAVGDANT KMAPKIERFP PAFQSIPRNP IVLDLAYNCI EFPVLDERKK KVQRGFISRL
601: WG
001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW
Arabidopsis Description
Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.