Factsheet for Solyc04g048930.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
endoplasmic reticulum 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0323266-00	Rice	cytosol	28.4	29.49
Solyc03g093970.2.1	Tomato	cytosol, plastid	69.14	9.3
Solyc02g062810.2.1	Tomato	nucleus	62.96	8.47
VIT_17s0000g00300.t01	Wine grape	cytosol	54.32	7.39
KRH59740	Soybean	cytosol, endoplasmic reticulum	51.85	6.97
AT5G61970.1	Thale cress	cytosol	50.62	6.78
CDX86945	Canola	cytosol	48.15	6.48
CDY00241	Canola	cytosol	48.15	6.48
Bra029296.1-P	Field mustard	cytosol	46.91	6.3
CDY30688	Canola	cytosol	46.91	6.29
Bra010045.1-P	Field mustard	cytosol	46.91	6.28
KRH41061	Soybean	cytosol	51.85	6.1
GSMUA_Achr9P05240_001	Banana	cytosol	43.21	5.82
TraesCS5A01G129400.1	Wheat	cytosol	38.27	5.17
HORVU5Hr1G042050.1	Barley	cytosol	38.27	5.16
KXG36669	Sorghum	cytosol	35.8	4.92
TraesCS5B01G128000.2	Wheat	cytosol	37.04	4.9
TraesCS5D01G136900.2	Wheat	cytosol	37.04	4.9
Zm00001d022115_P002	Maize	extracellular, mitochondrion, plasma membrane	34.57	4.74
Solyc02g062830.1.1	Tomato	plasma membrane	8.64	4.7
Solyc02g062840.1.1	Tomato	extracellular	3.7	3.09
Os08t0323000-01	Rice	cytosol, plasma membrane	9.88	1.86
Zm00001d031206_P001	Maize	cytosol	2.47	1.11
Zm00001d047530_P002	Maize	plastid	2.47	0.94
Zm00001d053170_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc04g048930.1.1	EnsemblPlantsGene:Solyc04g048930.1	Gene3D:1.10.3450.40	GO:GO:0003674	GO:GO:0005047	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005786
GO:GO:0006810	GO:GO:0008150	GO:GO:0045047	InterPro:IPR038253	InterPro:SRP68_N_sf	UniParc:UPI0002766441
UniProt:K4BRM1	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr4:-:38609928..38610317

Molecular Weight (calculated)

9554.8 Da

IEP (calculated)

10.459

GRAVY (calculated)

-0.425

Length

81 amino acids

Sequence
(BLAST)

1: MAKRKETSTT EIDDRSSMPS NQISNPKFSV NLLQLLKSTR MQHGLRFGDY ARYRCVISLH TYECLIRILK QTLFLKYKLQ V

Best Arabidopsis Sequence Match ( AT5G61970.1 )
(BLAST)

001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW

Arabidopsis Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.