Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00241 | Canola | cytosol | 89.75 | 90.2 |
| CDX86945 | Canola | cytosol | 89.26 | 89.7 |
| Bra029296.1-P | Field mustard | cytosol | 89.26 | 89.55 |
| CDY30688 | Canola | cytosol | 89.09 | 89.24 |
| Bra010045.1-P | Field mustard | cytosol | 88.26 | 88.26 |
| VIT_17s0000g00300.t01 | Wine grape | cytosol | 74.05 | 75.29 |
| PGSC0003DMT400040071 | Potato | cytosol | 61.49 | 75.15 |
| Solyc03g093970.2.1 | Tomato | cytosol, plastid | 74.38 | 74.75 |
| Solyc02g062810.2.1 | Tomato | nucleus | 73.39 | 73.75 |
| KRH59740 | Soybean | cytosol, endoplasmic reticulum | 73.06 | 73.3 |
| GSMUA_Achr9P05240_001 | Banana | cytosol | 71.24 | 71.71 |
| Os08t0323000-01 | Rice | cytosol, plasma membrane | 46.45 | 65.2 |
| HORVU5Hr1G042050.1 | Barley | cytosol | 64.63 | 65.06 |
| TraesCS5A01G129400.1 | Wheat | cytosol | 63.97 | 64.5 |
| KXG36669 | Sorghum | cytosol | 62.64 | 64.24 |
| Zm00001d022115_P002 | Maize | extracellular, mitochondrion, plasma membrane | 62.31 | 63.79 |
| TraesCS5B01G128000.2 | Wheat | cytosol | 64.3 | 63.56 |
| TraesCS5D01G136900.2 | Wheat | cytosol | 64.13 | 63.4 |
| KRH41061 | Soybean | cytosol | 70.08 | 61.54 |
| Solyc02g062840.1.1 | Tomato | extracellular | 9.59 | 59.79 |
| Solyc04g048930.1.1 | Tomato | nucleus | 6.78 | 50.62 |
| Solyc02g062830.1.1 | Tomato | plasma membrane | 12.4 | 50.34 |
| Zm00001d053170_P001 | Maize | cytosol | 10.91 | 47.83 |
| Os08t0323266-00 | Rice | cytosol | 5.12 | 39.74 |
| Zm00001d047530_P002 | Maize | plastid | 13.39 | 38.03 |
| Zm00001d031206_P001 | Maize | cytosol | 10.91 | 36.67 |
Protein Annotations
| Gene3D:1.10.3450.40 | MapMan:23.3.1.1.6 | EntrezGene:836318 | ProteinID:AED97544.1 | ArrayExpress:AT5G61970 | EnsemblPlantsGene:AT5G61970 |
| RefSeq:AT5G61970 | TAIR:AT5G61970 | RefSeq:AT5G61970-TAIR-G | EnsemblPlants:AT5G61970.1 | TAIR:AT5G61970.1 | EMBL:AY051002 |
| EMBL:AY079306 | Unigene:At.20648 | ProteinID:BAB08884.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005047 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005786 | GO:GO:0005829 | GO:GO:0006614 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0008312 | GO:GO:0030529 | GO:GO:0030942 | GO:GO:0045047 | InterPro:IPR038253 |
| RefSeq:NP_568947.1 | PFAM:PF16969 | PIRSF:PIRSF038995 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR12860 | UniProt:Q9FH46 | InterPro:SRP68 | InterPro:SRP68-RBD |
| InterPro:SRP68_N_sf | UniParc:UPI00000A5080 | SEG:seg | : | : | : |
Description
Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
Coordinates
chr5:+:24888596..24893366
Molecular Weight (calculated)
68836.2 Da
IEP (calculated)
9.140
GRAVY (calculated)
-0.536
Length
605 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.