Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30688 | Canola | cytosol | 99.5 | 99.34 |
| Bra010045.1-P | Field mustard | cytosol | 90.22 | 89.92 |
| AT5G61970.1 | Thale cress | cytosol | 89.55 | 89.26 |
| PGSC0003DMT400040071 | Potato | cytosol | 62.69 | 76.36 |
| Solyc03g093970.2.1 | Tomato | cytosol, plastid | 74.96 | 75.08 |
| VIT_17s0000g00300.t01 | Wine grape | cytosol | 73.96 | 74.96 |
| Solyc02g062810.2.1 | Tomato | nucleus | 74.3 | 74.42 |
| Bra036933.1-P | Field mustard | cytosol | 9.45 | 74.03 |
| KRH59740 | Soybean | cytosol, endoplasmic reticulum | 72.47 | 72.47 |
| Solyc02g062840.1.1 | Tomato | extracellular | 9.78 | 60.82 |
| KRH41061 | Soybean | cytosol | 69.49 | 60.81 |
| Solyc02g062830.1.1 | Tomato | plasma membrane | 12.44 | 50.34 |
| Solyc04g048930.1.1 | Tomato | nucleus | 6.3 | 46.91 |
Protein Annotations
| Gene3D:1.10.3450.40 | MapMan:23.3.1.1.6 | EnsemblPlantsGene:Bra029296 | EnsemblPlants:Bra029296.1 | EnsemblPlants:Bra029296.1-P | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005047 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005786 | GO:GO:0006614 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0008312 | GO:GO:0030529 | GO:GO:0030942 | InterPro:IPR038253 | UniProt:M4EKH9 |
| PFAM:PF16969 | PIRSF:PIRSF038995 | PANTHER:PTHR12860 | InterPro:SRP68 | InterPro:SRP68-RBD | InterPro:SRP68_N_sf |
| UniParc:UPI0002545BA4 | SEG:seg | : | : | : | : |
Description
AT5G61970 (E=4e-302) | signal recognition particle-related / SRP-related
Coordinates
chrA02:+:26040222..26044060
Molecular Weight (calculated)
68654.3 Da
IEP (calculated)
9.151
GRAVY (calculated)
-0.545
Length
603 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKENEMSA MEIDDPKLDG SDQILPRFSM NVLQLMKTSQ AQHGLRRGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTNV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLIGRLR KAVKWATLFS SLCSVKTDSR TSLEAEAYAS YMKGTMLFEQ DQNWETALAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSVQYCLHK IGKANLQTSD LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFNWL GYRFPVSNPK SRVSILKAQE LEKDLQGPTA
301: ESLPAEKKLT IFDKLFTAYN DARNTIRSDL VSAGNAESVK DELNGLDKAV GAVLGQRTIE RNQLLVKIAK SKLNRKRDDK NEKVTKPEEL VRLYDLLLQN
401: VADLSDLVSS GRDRKPEEIA FEEECERKSL AFRAERCFYL GKSYSLAGKR VEAYALFCRA RSLAEDALNK FQNIANKDEG TIQELKTLSR ECRASSCIEH
501: ATGIMEEEKA PENLSKKISA ISLNETATKA EKYLLDKLDV YESAVGDANT KMAPKIERFP PAFQSIPRNP IVLDLAYNCI EFPVLEERMK KGRGGFLRFF
601: RSG
101: ERAWSHAMEK RQLPDGPNAR QRIYLIGRLR KAVKWATLFS SLCSVKTDSR TSLEAEAYAS YMKGTMLFEQ DQNWETALAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSVQYCLHK IGKANLQTSD LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFNWL GYRFPVSNPK SRVSILKAQE LEKDLQGPTA
301: ESLPAEKKLT IFDKLFTAYN DARNTIRSDL VSAGNAESVK DELNGLDKAV GAVLGQRTIE RNQLLVKIAK SKLNRKRDDK NEKVTKPEEL VRLYDLLLQN
401: VADLSDLVSS GRDRKPEEIA FEEECERKSL AFRAERCFYL GKSYSLAGKR VEAYALFCRA RSLAEDALNK FQNIANKDEG TIQELKTLSR ECRASSCIEH
501: ATGIMEEEKA PENLSKKISA ISLNETATKA EKYLLDKLDV YESAVGDANT KMAPKIERFP PAFQSIPRNP IVLDLAYNCI EFPVLEERMK KGRGGFLRFF
601: RSG
001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW
Arabidopsis Description
Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.