CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41061	Soybean	cytosol	90.05	78.81
VIT_17s0000g00300.t01	Wine grape	cytosol	76.29	77.31
PGSC0003DMT400040071	Potato	cytosol	60.86	74.14
Solyc02g062810.2.1	Tomato	nucleus	73.8	73.92
Solyc03g093970.2.1	Tomato	cytosol, plastid	73.63	73.75
AT5G61970.1	Thale cress	cytosol	73.3	73.06
Bra029296.1-P	Field mustard	cytosol	72.47	72.47
CDY30688	Canola	cytosol	72.31	72.19
GSMUA_Achr9P05240_001	Banana	cytosol	71.81	72.05
CDY00241	Canola	cytosol	71.48	71.59
CDX86945	Canola	cytosol	71.31	71.43
Bra010045.1-P	Field mustard	cytosol	70.32	70.08
HORVU5Hr1G042050.1	Barley	cytosol	63.52	63.73
TraesCS5A01G129400.1	Wheat	cytosol	63.18	63.5
Os08t0323000-01	Rice	cytosol, plasma membrane	45.11	63.11
KXG36669	Sorghum	cytosol	61.69	63.05
Zm00001d022115_P002	Maize	extracellular, mitochondrion, plasma membrane	61.69	62.94
TraesCS5B01G128000.2	Wheat	cytosol	63.18	62.25
TraesCS5D01G136900.2	Wheat	cytosol	63.18	62.25
Solyc02g062840.1.1	Tomato	extracellular	9.45	58.76
Solyc04g048930.1.1	Tomato	nucleus	6.97	51.85
Zm00001d053170_P001	Maize	cytosol	11.28	49.28
Solyc02g062830.1.1	Tomato	plasma membrane	12.11	48.99
Os08t0323266-00	Rice	cytosol	5.47	42.31
Zm00001d047530_P002	Maize	plastid	13.43	38.03
Zm00001d031206_P001	Maize	cytosol	11.28	37.78

Protein Annotations

Gene3D:1.10.3450.40	EntrezGene:100816486	MapMan:23.3.1.1.6	EMBL:ACUP02003339	EnsemblPlantsGene:GLYMA_05G200600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005047	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810
GO:GO:0008150	GO:GO:0008312	GO:GO:0030529	GO:GO:0030942	GO:GO:0045047	UniProt:I1K6T4
InterPro:IPR038253	EnsemblPlants:KRH59740	ProteinID:KRH59740	ProteinID:KRH59740.1	PFAM:PF16969	PIRSF:PIRSF038995
PANTHER:PTHR12860	InterPro:SRP68	InterPro:SRP68-RBD	InterPro:SRP68_N_sf	UniParc:UPI00023399EF	SEG:seg

Description

hypothetical protein

Coordinates

chr5:+:38420639..38428049

Molecular Weight (calculated)

68352.3 Da

IEP (calculated)

9.166

GRAVY (calculated)

-0.434

Length

603 amino acids

Sequence
(BLAST)

001: MGKESQTSAM EIDAPKSMNS DLIVPKFSIN VLQLLKSAQM QHGLRHGDYT RYRRYCTARL RRLYKSLKFT HGRGKYAKRA LTESTVTEVR FLHVILYTAE
101: RAWSHAMEKR QLPNGPNARQ RIYLIGRLRK AVKWATLFSQ LCAVKADSRT SLEAEAYESY MKGSLLFEQD QNWDVALKNF KSARAVYEEL GKYGDLDNQV
201: LCRERVEELE PSIRYCLHKI GQSDLQASEL LQISDVEGPA LDLFKAKLEA AMAEARSQQA ASMTEFLWLG HRFPISNAKT RVSILKAQEL EKDIHGPLAD
301: SIPADKRLVI FDKIFSAYHE ARGYIRADLA TTGSTESVKD DLNGLDKAVS AVLGERTIDR NLLLVKVAKS KLAKRHDDKN EKLTKPEELV RLYDLLLQNT
401: GDLSDLVSSG RDKKPEEVIF AEVCSCKSLA FRAQRCFYVA KSYSVAGKRA EAYALYCRAR NLADDALKKF QMLDGDNKTM MKELEDLCNE CRSNSCIEHA
501: LGIMEEKKTQ ENLSERVSNI SLTGTERLEK FLLEKLDVYE SAVGDSNVKC TPRIAGFPPA FQAISRNPIV LDLAYNMIEF PPIENRMKKD RKAKGGFISR
601: IFG

Best Arabidopsis Sequence Match ( AT5G61970.1 )
(BLAST)

001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW

Arabidopsis Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.