Factsheet for Os08t0323000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G042050.1	Barley	cytosol	86.77	62.23
TraesCS5A01G129400.1	Wheat	cytosol	86.31	62.0
KXG36669	Sorghum	cytosol	84.45	61.69
TraesCS5B01G128000.2	Wheat	cytosol	86.31	60.78
TraesCS5D01G136900.2	Wheat	cytosol	85.61	60.29
PGSC0003DMT400040071	Potato	cytosol	64.04	55.76
Bra036933.1-P	Field mustard	cytosol	9.28	51.95
GSMUA_Achr9P05240_001	Banana	cytosol	71.0	50.92
VIT_17s0000g00300.t01	Wine grape	cytosol	65.2	47.23
CDY30688	Canola	cytosol	65.43	46.69
CDY00241	Canola	cytosol	64.97	46.51
AT5G61970.1	Thale cress	cytosol	65.2	46.45
CDX86945	Canola	cytosol	64.73	46.35
Solyc02g062810.2.1	Tomato	nucleus	64.27	46.01
Solyc03g093970.2.1	Tomato	cytosol, plastid	63.81	45.68
KRH59740	Soybean	cytosol, endoplasmic reticulum	63.11	45.11
Zm00001d053170_P001	Maize	cytosol	12.76	39.86
KRH41061	Soybean	cytosol	57.77	36.14
Zm00001d047530_P002	Maize	plastid	16.24	32.86
Zm00001d031206_P001	Maize	cytosol	11.83	28.33
Solyc04g048930.1.1	Tomato	nucleus	1.86	9.88
Solyc02g062840.1.1	Tomato	extracellular	0.93	4.12
Os08t0323266-00	Rice	cytosol	0.23	1.28
Solyc02g062830.1.1	Tomato	plasma membrane	0.23	0.67

Protein Annotations

Gene3D:1.10.3450.40	MapMan:23.3.1.1.6	UniProt:A0A0P0XEB1	ProteinID:BAT04881.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005047	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150
GO:GO:0008312	GO:GO:0030942	GO:GO:0045047	InterPro:IPR038253	EnsemblPlantsGene:Os08g0323000	EnsemblPlants:Os08t0323000-01
PFAM:PF16969	PANTHER:PTHR12860	InterPro:SRP68	InterPro:SRP68_N_sf	UniParc:UPI000393AB92	:

Description

Similar to Signal recognition particle 68 kDa protein. (Os08t0323000-01)

Coordinates

chr8:-:14105821..14113578

Molecular Weight (calculated)

48602.8 Da

IEP (calculated)

6.995

GRAVY (calculated)

-0.481

Length

431 amino acids

Sequence
(BLAST)

001: TLLFEQEKNI EAAMTNFKNT RAVYEELGKY GSIENQLLCR QRIEEVEPMI GFCSRKLGGS ALQAHELLDL EKEGPAYDLF KAKIEAVLSE TRSQQAASMT
101: EFSWLGRRFP ITNAKTRVSI LKAQQLEKDL NGANTESVPA DKKLGIFDKI FSAYHDARSC IRNDLASAGN AENIRDELNG LDKAVSAVLG FRTIERNQLL
201: VSIAKSKFTK HRDEKNEKIT KPEELVRLYD LLIQNTTDLT DLISSGRDKN KEENTFIQEY ELKSLAFRAE RCFYLAKSYS SAGKRAESYA LFCHARSITD
301: SALQQLTNSP DKALVQDLKA LSDSCRSNSF IEHATGIMEE ENVPERLSKG VSTLSLGERK AFLLDMLESY ESALGESNTK TPCRIARFPP PFQSVPCNPI
401: VLDMAYNAIE FPNIENRMKK EKKGLLSRFW G

Best Arabidopsis Sequence Match ( AT5G61970.1 )
(BLAST)

001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW

Arabidopsis Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.