Factsheet for Bra036933.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
MultiLoc:	cytosol
Plant-mPloc:	extracellular, nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010045.1-P	Field mustard	cytosol	98.7	12.56
Bra029296.1-P	Field mustard	cytosol	74.03	9.45
Os08t0323000-01	Rice	cytosol, plasma membrane	51.95	9.28
GSMUA_Achr9P05240_001	Banana	cytosol	55.84	7.15
KXG36669	Sorghum	cytosol	54.55	7.12
TraesCS5A01G129400.1	Wheat	cytosol	49.35	6.33
HORVU5Hr1G042050.1	Barley	cytosol	49.35	6.32
TraesCS5B01G128000.2	Wheat	cytosol	49.35	6.21
TraesCS5D01G136900.2	Wheat	cytosol	49.35	6.21
Zm00001d031206_P001	Maize	cytosol	2.6	1.11
Zm00001d047530_P002	Maize	plastid	2.6	0.94
Os08t0323266-00	Rice	cytosol	0.0	0.0
Zm00001d053170_P001	Maize	cytosol	0.0	0.0

Protein Annotations

MapMan:35.2	EnsemblPlantsGene:Bra036933	EnsemblPlants:Bra036933.1	EnsemblPlants:Bra036933.1-P	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005047	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312
GO:GO:0030942	UniProt:M4F773	PFAM:PF16969	PANTHER:PTHR12860	InterPro:SRP68	UniParc:UPI000253E686

Description

AT5G61970 (E=2e-024) | signal recognition particle-related / SRP-related

Coordinates

chrScaffold000123:+:79189..80143

Molecular Weight (calculated)

8931.8 Da

IEP (calculated)

6.706

GRAVY (calculated)

-0.586

Length

77 amino acids

Sequence
(BLAST)

1: MVEKYLVDKL EEYESAVGDG NTKMAPKIER FPPGFETIPR NPIVLDLAYN CIEFPVLEER KKTERKGFIS RLWGGRN

Best Arabidopsis Sequence Match ( AT5G61970.1 )
(BLAST)

001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW

Arabidopsis Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.