Factsheet for GSMUA_Achr9P05240_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040071	Potato	cytosol	63.23	76.77
VIT_17s0000g00300.t01	Wine grape	cytosol	75.37	76.13
Solyc02g062810.2.1	Tomato	nucleus	75.21	75.08
Solyc03g093970.2.1	Tomato	cytosol, plastid	74.38	74.25
KRH59740	Soybean	cytosol, endoplasmic reticulum	72.05	71.81
CDY00241	Canola	cytosol	71.88	71.76
CDX86945	Canola	cytosol	71.71	71.59
CDY30688	Canola	cytosol	71.71	71.36
AT5G61970.1	Thale cress	cytosol	71.71	71.24
Os08t0323000-01	Rice	cytosol, plasma membrane	50.92	71.0
KXG36669	Sorghum	cytosol	68.89	70.17
HORVU5Hr1G042050.1	Barley	cytosol	69.22	69.22
TraesCS5A01G129400.1	Wheat	cytosol	69.05	69.17
Zm00001d022115_P002	Maize	extracellular, mitochondrion, plasma membrane	67.89	69.04
TraesCS5B01G128000.2	Wheat	cytosol	69.72	68.46
TraesCS5D01G136900.2	Wheat	cytosol	69.05	67.81
KRH41061	Soybean	cytosol	68.89	60.09
Solyc02g062840.1.1	Tomato	extracellular	9.32	57.73
Bra036933.1-P	Field mustard	cytosol	7.15	55.84
Zm00001d053170_P001	Maize	cytosol	11.48	50.0
Solyc02g062830.1.1	Tomato	plasma membrane	11.65	46.98
Solyc04g048930.1.1	Tomato	nucleus	5.82	43.21
Zm00001d047530_P002	Maize	plastid	14.31	40.38
Os08t0323266-00	Rice	cytosol	5.16	39.74
Zm00001d031206_P001	Maize	cytosol	11.48	38.33

Protein Annotations

Gene3D:1.10.3450.40	MapMan:23.3.1.1.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005047
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005786
GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0030529	GO:GO:0030942
EnsemblPlantsGene:GSMUA_Achr9G05240_001	EnsemblPlants:GSMUA_Achr9P05240_001	EnsemblPlants:GSMUA_Achr9T05240_001	InterPro:IPR038253	UniProt:M0TXN3	PFAM:PF16969
PIRSF:PIRSF038995	PANTHER:PTHR12860	InterPro:SRP68	InterPro:SRP68-RBD	InterPro:SRP68_N_sf	UniParc:UPI0002968F1D
SEG:seg	:	:	:	:	:

Description

Putative Signal recognition particle 68 kDa protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G05240_001]

Coordinates

chr9:-:3384533..3393427

Molecular Weight (calculated)

68144.7 Da

IEP (calculated)

8.874

GRAVY (calculated)

-0.490

Length

601 amino acids

Sequence
(BLAST)

001: MAKKDESTVM ELDGDKSAAA EQIITKFPIN VLQLVKSAQM QHGLRHRDYT RYRRYCTARL RRLYKSLKFT HGRGKYSRKT ITESTITDVR FLHIVLYMAE
101: RAWSHAMEKK QLPDGPNSRQ RIHLLGRLRK AVKWATLFAQ LCAAKGDSRT SLEAEAYASY MKGSLLFEQD QNWQSALMNF KNARAVYEEL GKYGNIENQV
201: LCRERVEELE PSIRYCLHKV GESNLQTSEL MDIGELEGPA LDLFKSKLEA VMAEARSQQA ASMTEFYWLG HRFPVNNAKT RVSILKAQEL EKDLHGSASD
301: SLPAEKKLAM FDKIFSAYHD ARSCIRNDLA TAGNAENVKD DLNGLDKAVS AVLGQRTIER NQLLVAIAKS KFTKQRDDKG DKVTKPEELV RLYDLLIQNT
401: SDLSDLVSSG RDRNPEEVAL VEECVIKGTV FRAERCFYLA KSYSSAGKRA EAYLLFCHAR SLGDTALEKL QMTSNPDQTL IKDLKVLSDN CRSNSCIEHA
501: AGIMEEEKIP EKLSKGVSTI SLTGQEKKED KVLLEMLDVY ESAVGDHNSK VVPRIERFPP PFQAVPCNPI VLDIAYSSIE FPSLENRMKK DKKGIFSRLW
601: R

Best Arabidopsis Sequence Match ( AT5G61970.1 )
(BLAST)

001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW

Arabidopsis Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.