Factsheet for Solyc02g062830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
endoplasmic reticulum 5
extracellular 4
vacuole 4
plasma membrane 5
golgi 4
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	mitochondrion, nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062840.1.1	Tomato	extracellular	41.61	63.92
Solyc02g062810.2.1	Tomato	nucleus	63.76	15.78
Solyc03g093970.2.1	Tomato	cytosol, plastid	61.07	15.12
Zm00001d053170_P001	Maize	cytosol	12.75	13.77
VIT_17s0000g00300.t01	Wine grape	cytosol	52.35	13.11
CDX86945	Canola	cytosol	51.01	12.62
CDY00241	Canola	cytosol	51.01	12.62
Bra010045.1-P	Field mustard	cytosol	51.01	12.56
Bra029296.1-P	Field mustard	cytosol	50.34	12.44
CDY30688	Canola	cytosol	50.34	12.42
AT5G61970.1	Thale cress	cytosol	50.34	12.4
KRH59740	Soybean	cytosol, endoplasmic reticulum	48.99	12.11
KXG36669	Sorghum	cytosol	47.65	12.03
Zm00001d022115_P002	Maize	extracellular, mitochondrion, plasma membrane	46.98	11.84
TraesCS5A01G129400.1	Wheat	cytosol	47.65	11.83
HORVU5Hr1G042050.1	Barley	cytosol	47.65	11.81
TraesCS5D01G136900.2	Wheat	cytosol	48.32	11.76
GSMUA_Achr9P05240_001	Banana	cytosol	46.98	11.65
TraesCS5B01G128000.2	Wheat	cytosol	47.65	11.6
Zm00001d047530_P002	Maize	plastid	15.44	10.8
KRH41061	Soybean	cytosol	48.32	10.45
PGSC0003DMT400040071	Potato	cytosol	30.2	9.09
Zm00001d031206_P001	Maize	cytosol	10.74	8.89
Solyc04g048930.1.1	Tomato	nucleus	4.7	8.64
Os08t0323266-00	Rice	cytosol	2.68	5.13
Os08t0323000-01	Rice	cytosol, plasma membrane	0.67	0.23

Protein Annotations

Gene3D:1.10.3450.40	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005047
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150	GO:GO:0008312	GO:GO:0030942
GO:GO:0045047	InterPro:IPR038253	UniProt:K4B6H1	PFAM:PF16969	PANTHER:PTHR12860	InterPro:SRP68
InterPro:SRP68_N_sf	EnsemblPlantsGene:Solyc02g062830.1	EnsemblPlants:Solyc02g062830.1.1	UniParc:UPI000276845D	:	:

Description

No Description!

Coordinates

chr2:+:34664900..34668336

Molecular Weight (calculated)

17354.4 Da

IEP (calculated)

10.846

GRAVY (calculated)

-0.198

Length

149 amino acids

Sequence
(BLAST)

001: MGKQKSRIRV LFLLIRSVTL SSLSMVYENW NLQEVFYGPI RRLYKSLKFT HGRLKYTKRS ISVTMVTEVS FLHLVLYTTE RAWSHAMEKK TLLDRPNAHQ
101: RSYLIGQLRK AVKWASLFQE LCSTKGDSRT SLEAEIMYSS AILVMRSGN

Best Arabidopsis Sequence Match ( AT5G61970.1 )
(BLAST)

001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW

Arabidopsis Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.