Factsheet for Zm00001d022115_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36669	Sorghum	cytosol	96.28	96.44
HORVU5Hr1G042050.1	Barley	cytosol	83.93	82.53
TraesCS5A01G129400.1	Wheat	cytosol	83.76	82.5
TraesCS5B01G128000.2	Wheat	cytosol	83.76	80.88
TraesCS5D01G136900.2	Wheat	cytosol	82.74	79.9
Zm00001d053170_P001	Maize	cytosol	15.91	68.12
GSMUA_Achr9P05240_001	Banana	cytosol	69.04	67.89
VIT_17s0000g00300.t01	Wine grape	cytosol	65.65	65.21
CDX86945	Canola	cytosol	64.81	63.62
CDY00241	Canola	cytosol	64.81	63.62
CDY30688	Canola	cytosol	64.81	63.41
AT5G61970.1	Thale cress	cytosol	63.79	62.31
PGSC0003DMT400040071	Potato	cytosol	52.12	62.22
Solyc03g093970.2.1	Tomato	cytosol, plastid	62.94	61.79
KRH59740	Soybean	cytosol, endoplasmic reticulum	62.94	61.69
Solyc02g062810.2.1	Tomato	nucleus	62.27	61.13
Solyc02g062840.1.1	Tomato	extracellular	9.14	55.67
Zm00001d047530_P002	Maize	plastid	18.61	51.64
KRH41061	Soybean	cytosol	59.39	50.94
Solyc02g062830.1.1	Tomato	plasma membrane	11.84	46.98
Zm00001d031206_P001	Maize	cytosol	14.04	46.11
Solyc04g048930.1.1	Tomato	nucleus	4.74	34.57

Protein Annotations

Gene3D:1.10.3450.40	EntrezGene:100192526	MapMan:23.3.1.1.6	UniProt:B4FBP3	EMBL:BT034531	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005047	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005786	GO:GO:0006614	GO:GO:0006810	GO:GO:0008150
GO:GO:0008312	GO:GO:0030529	GO:GO:0030942	InterPro:IPR038253	ProteinID:ONM59569.1	PFAM:PF16969
PIRSF:PIRSF038995	PANTHER:PTHR12860	InterPro:SRP68	InterPro:SRP68-RBD	InterPro:SRP68_N_sf	UniParc:UPI00017B63FF
EnsemblPlantsGene:Zm00001d022115	EnsemblPlants:Zm00001d022115_P002	EnsemblPlants:Zm00001d022115_T002	SEG:seg	:	:

Description

signal recognition particle-related / SRP-related

Coordinates

chr7:+:170665003..170671361

Molecular Weight (calculated)

67142.2 Da

IEP (calculated)

8.875

GRAVY (calculated)

-0.500

Length

591 amino acids

Sequence
(BLAST)

001: MSKPADQQPS DMQVDSSVAE EKPAIRFSIN VLELMREAQM QHGLRQSDYT RYRRYCSARL RRLYKSLKFL HGRGKYNRRN ITESTVTDVR FLHVVFYMAE
101: RAWSHAMEKK TAGTNAKQRI YMLGRFRKAV KWASLFSQLC SVKGDSRTSL EAEAYASYMK GALFFEQDKN IDAAMINFKN TRAIYEELGK YGSIENQLLC
201: RQRIDEVEPM IDFCSHKLGG SYLQAHELLD TANDLLKAKM EAVLSETRSQ QAASMTEFKW LGRTFPITNA KTRVSILKAQ QLERDLSAAA TESVAADKKL
301: AIFDKIFSAY HDARSCIRND LASAGNAEDI KDDLNGLDKA VSAVLGLRTI ERNQLLVSIG KSKFTKHRDE KNERTTKPEE LVRLYDLLIQ NVTDLTDLVS
401: SGRNKNEEEN SFIHEYELKG LAFRAERCFF LAKSYSSAGK RAEAYALFCH AHTLTGSALQ QHSNSHDKAL IQDLEFLSNN CRSNSCIEHA TGIMEEEIVP
501: LKLSKGVSTM SLADNKTKEN KYLLDMLESY ESAIGEPNTK APCRIAQFPP PFQAVPCNPI VLDMAYNSVE FPNLENRMKK EKKGLLSRFW G

Best Arabidopsis Sequence Match ( AT5G61970.1 )
(BLAST)

001: MGKKQSEISA MEIDDPKSES SDQILPRFSI NVLQLMKSSQ AQHGLRHGDY ARYRRYCSAR LRRLYKSLKF THGRGKYTRR AILESTVTDV RFLHVVFYMA
101: ERAWSHAMEK RQLPDGPNAR QRIYLVGRLR KAVKWASLFS SLCSIKTDSR TSLEAEAYAS YMKGTLLFEQ DQNWETGLAC FKNARAVYEE LGKYGDLENQ
201: VLCRERVEEL EPSIRYCLHK IGKSNLQTSE LLQIGEMEGP ALDLFKAKIE AAMEEARSQQ AASLTEFSWL GYRFPVSNPK SRVSILKAQE LEKELQSPTA
301: ESLPAEKKLT IFDKLFTAYH DARNTIRSDL VSAGNAESVK DDLNGLDKAV GAVLGQRTIE RNQLLVKVAK SKLNRKRDDK NDKVTRPEEL VRLYDLLLQN
401: VADLSDLISS GRDRKPEEIA FEEECQRTSL AFRAERCFYL AKSYSLAGKR AEAFALYSRA RSLAEDALNK FQSIAKKDEG TIQELKTLIK ECRANSCIEH
501: ATGIMEEERA PENLSNRMST ISLNNTAAQV EEKYLLDKLD VYESAVGDSN TKTAPKIERF PPALQSIPRN PIVLDLAYNC IDFPVIENRM KKKGGFFSSR
601: ISSLW

Arabidopsis Description

Signal recognition particle subunit SRP68 [Source:UniProtKB/TrEMBL;Acc:Q9FH46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.